Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30n13
         (761 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67755-9|CAM33504.2|  224|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF156960-1|AAD54945.1|  137|Caenorhabditis elegans NTF2-related ...    29   3.6  
AC024852-2|AAK66028.1|  137|Caenorhabditis elegans Ntf2-related ...    29   3.6  
M32877-1|AAA28001.1|  669|Caenorhabditis elegans daf-1 protein.        28   8.3  
AF067616-10|AAC19189.2|  668|Caenorhabditis elegans Abnormal dau...    28   8.3  
AF067616-9|AAP82657.1|  669|Caenorhabditis elegans Abnormal daue...    28   8.3  

>Z67755-9|CAM33504.2|  224|Caenorhabditis elegans Hypothetical
           protein F54F7.9 protein.
          Length = 224

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = -3

Query: 336 FSCLFCIFSILSTDVKSCFEQCISCFKKALTFFLVFIVR 220
           F C+   FS ++T+ + C+E+ +S  +K+  F L F++R
Sbjct: 119 FECMTLEFSSITTNAQKCYEKMVSNEEKS-QFSLSFLMR 156


>AF156960-1|AAD54945.1|  137|Caenorhabditis elegans NTF2-related
           export protein NXT1 protein.
          Length = 137

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/86 (19%), Positives = 40/86 (46%)
 Frame = +2

Query: 50  NQRITTRLSQENINKCNKSVERQRARTFVTWYKQMIDNERQNLALYLADDAFLEWFGRTI 229
           + + T  +++E+   CN+S      + F+  Y  ++D +R+ +       +   W G  I
Sbjct: 2   SMKTTQEINKEDEELCNES------KKFMDVYYDVMDRKREKIGFLYTQVSNAVWNGNPI 55

Query: 230 KTRKKVSAFLKHDMHCSKHDFTSVES 307
                +  F+K  +  ++HD  S+++
Sbjct: 56  NGYDSICEFMK-ALPSTQHDIQSLDA 80


>AC024852-2|AAK66028.1|  137|Caenorhabditis elegans Ntf2-related
           export protein protein1, isoform a protein.
          Length = 137

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/86 (19%), Positives = 40/86 (46%)
 Frame = +2

Query: 50  NQRITTRLSQENINKCNKSVERQRARTFVTWYKQMIDNERQNLALYLADDAFLEWFGRTI 229
           + + T  +++E+   CN+S      + F+  Y  ++D +R+ +       +   W G  I
Sbjct: 2   SMKTTQEINKEDEELCNES------KKFMDVYYDVMDRKREKIGFLYTQVSNAVWNGNPI 55

Query: 230 KTRKKVSAFLKHDMHCSKHDFTSVES 307
                +  F+K  +  ++HD  S+++
Sbjct: 56  NGYDSICEFMK-ALPSTQHDIQSLDA 80


>M32877-1|AAA28001.1|  669|Caenorhabditis elegans daf-1 protein.
          Length = 669

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 629 CIPVTPPNPELGQGDCLPSTSGTDSDKSHDT 721
           C     P+PE+    C+   S TD  + HDT
Sbjct: 96  CYQSARPSPEISHFGCMDEKSVTDETEFHDT 126


>AF067616-10|AAC19189.2|  668|Caenorhabditis elegans Abnormal dauer
           formation protein1, isoform b protein.
          Length = 668

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 629 CIPVTPPNPELGQGDCLPSTSGTDSDKSHDT 721
           C     P+PE+    C+   S TD  + HDT
Sbjct: 96  CYQSARPSPEISHFGCMDEKSVTDETEFHDT 126


>AF067616-9|AAP82657.1|  669|Caenorhabditis elegans Abnormal dauer
           formation protein1, isoform a protein.
          Length = 669

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 629 CIPVTPPNPELGQGDCLPSTSGTDSDKSHDT 721
           C     P+PE+    C+   S TD  + HDT
Sbjct: 96  CYQSARPSPEISHFGCMDEKSVTDETEFHDT 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,310,660
Number of Sequences: 27780
Number of extensions: 342626
Number of successful extensions: 1229
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)