Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30n10
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...    29   0.61 
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    27   3.3  
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos...    26   4.3  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    26   5.7  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    25   7.5  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    25   9.9  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   9.9  

>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
 Frame = +2

Query: 329 KGVWENDRLGANDEVIIHFSDDARYEGQLKDWSFWGP------GKYYYPDGSVVRCDFND 490
           K  ++N R       +     +AR   QLK + F  P      GK YYP G +    FND
Sbjct: 132 KNFYQNHRRYTVSADMFQLLGEARTVAQLKSYGFCKPLEANEEGKPYYPCGIIANSLFND 191

Query: 491 N 493
           +
Sbjct: 192 S 192


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 617 PVFSPTSHKNDSLARTIH 564
           P+FSPT  KN S+  T H
Sbjct: 452 PLFSPTEEKNQSITSTHH 469


>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 196

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = -3

Query: 659 RNPLSSLERAYETRPVFSPTSHKNDSLARTI-HSLAPLSQARHVR--LDHL-IPYSQLDS 492
           R P+S LE+    RP+ +    KND  A ++ H    + + R  +  + HL   YS +DS
Sbjct: 79  RPPISELEKEKLERPLSNKKKEKNDHKAESLKHDYDSVGEKRISKDSVKHLDKTYSSIDS 138


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
 Frame = -3

Query: 650 LSSLERAYETRPVFSPTSHKNDSLARTI---HSLAPLSQARHVRLDHLIPYSQLDSCR*N 480
           +SS E  Y   P       + DSL RT    H+    +  R     + +  +  DS R N
Sbjct: 228 MSSFEDQYGRLP--PGWERRADSLGRTYYVDHNTRTTTWTRPASSTNPVHNTSSDSQRLN 285

Query: 479 HNEQHFHPDSN 447
           H  +H   DSN
Sbjct: 286 HQNRHLPDDSN 296


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 581 VNHFYEMLEKTRDVSRKHVPKMKEDSVKP 667
           +N ++ M EK    S +H+ K+ E  +KP
Sbjct: 339 LNLYHAMDEKISTFSSEHITKLIEQQIKP 367


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 438 LESITIRMEVLFVVILTTTVQLGIWY 515
           LES  + + VL++V+   TV + +WY
Sbjct: 668 LESYGLNIRVLYMVLGIVTVGILVWY 693


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = -3

Query: 575  RTIHSLAPLSQARHVRLDHLIPYSQL 498
            RT+HSLA L    HV L HL+   QL
Sbjct: 2098 RTVHSLARLLAFWHVEL-HLVSPEQL 2122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,842,261
Number of Sequences: 5004
Number of extensions: 63007
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)