Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30n10
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical p...    29   4.0  
AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical...    28   6.9  
AF024500-2|AAB70360.1|  467|Caenorhabditis elegans Hypothetical ...    27   9.2  

>U64833-11|AAB04822.2|  615|Caenorhabditis elegans Hypothetical
           protein B0507.1 protein.
          Length = 615

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 461 GSVVRCDFNDNCPVGNMVLSDPNGHV 538
           G ++RC+ + +C +G+M   DPN HV
Sbjct: 528 GQLIRCERSSDCSMGHM--CDPNTHV 551


>AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.1 protein.
          Length = 448

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 567 PQPSSAFPSQTCPFGSLNTIFPTGQLSLKSQRTTLPSG**YFPGP 433
           P P +  P +T P  +   I PT + ++  Q TTLP G    PGP
Sbjct: 235 PAPPATQPPRTYPTTTPRPI-PTTKTTVPQQWTTLPPGPEPTPGP 278


>AF024500-2|AAB70360.1|  467|Caenorhabditis elegans Hypothetical
           protein K06H6.4 protein.
          Length = 467

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 454 IVILSRTPETPIFQLTFVPRVIRKMYYYFIVC 359
           I + + + ETP + +  VPR I K  +YF VC
Sbjct: 151 IAVSATSDETPEYSVPIVPR-INKPPHYFTVC 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,666,852
Number of Sequences: 27780
Number of extensions: 355525
Number of successful extensions: 914
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)