Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30n09
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.4  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    27   3.2  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    25   7.4  
SPBC32F12.12c |||conserved fungal protein|Schizosaccharomyces po...    25   7.4  
SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch...    25   9.8  

>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = +2

Query: 269 SPKNTFRRTADGVDGEYLQFHDHSRFEDHSDLNGLHTICLSAYRMFNREPSIISTSFIRA 448
           SP+ T   T  GV  + L+  +  +F D  + + +    + ++  F+R+   IS S  R 
Sbjct: 150 SPRRTIATTCKGVLEDVLKKDNELKFNDSDEEDEVDDEEIESFNSFSRKMQTISNSRYRG 209

Query: 449 A 451
           +
Sbjct: 210 S 210


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +2

Query: 422 IISTSFIRAACRNIH*NSERFSFTNKNKFEVITRASAQST*YFDND 559
           I S S I A+  N    S+ FSF+ +N F V   +S+ ST  + ND
Sbjct: 491 IESDSGIEASESNRR-KSDIFSFSGRNSFSVSRPSSSHSTLSYAND 535


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +3

Query: 207 FIISYYYTCFYGTVGLFISVHHLKTHLGEQPMASTENIYNFMIIHDLKIIATSMGFI 377
           F++  +++ F+G+VGL I    L     ++       IY   I     I   + GFI
Sbjct: 131 FVVFRFFSGFFGSVGLGIGAGSLSDMFSKRDRGKYIGIYFLGICLGPAIAPIASGFI 187


>SPBC32F12.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 164

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 190 VVNIIHL*LVTIILASTGLSAYLLVFI 270
           +VN+ H+ LV +  A T +   LL+FI
Sbjct: 43  IVNLFHVTLVVLFSALTIIEGVLLIFI 69


>SPAC23H4.08 |||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 308 DGEYLQFHDHSRFEDHSDLNGLHT-ICLSAYRMFNREPSIISTS 436
           D  Y+Q +D S    H D+  +H+   +S+ +  N    ++ TS
Sbjct: 54  DDRYIQINDESSEPTHEDVRNIHSHTKISSLKKNNYGIPVVQTS 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,566,408
Number of Sequences: 5004
Number of extensions: 51602
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)