Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30n09
(667 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical pr... 35 0.060
U39745-6|AAA80448.2| 392|Caenorhabditis elegans Hypothetical pr... 31 0.73
U50301-12|AAB37053.2| 486|Caenorhabditis elegans Hypothetical p... 29 3.9
AL034393-26|CAI59121.1| 936|Caenorhabditis elegans Hypothetical... 28 5.2
AL034393-25|CAI59120.1| 797|Caenorhabditis elegans Hypothetical... 28 5.2
AL034393-24|CAA22312.3| 833|Caenorhabditis elegans Hypothetical... 28 5.2
AF068713-9|AAC17800.1| 284|Caenorhabditis elegans Serpentine re... 28 6.8
U40427-5|AAP82652.1| 356|Caenorhabditis elegans Abnormal cell m... 27 9.1
U40427-4|AAA81470.2| 362|Caenorhabditis elegans Abnormal cell m... 27 9.1
AF150958-1|AAD43178.1| 362|Caenorhabditis elegans guidance prot... 27 9.1
>Z70309-6|CAA94360.1| 324|Caenorhabditis elegans Hypothetical
protein R102.6 protein.
Length = 324
Score = 34.7 bits (76), Expect = 0.060
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Frame = +3
Query: 345 LKIIATSMGF----IQYVCLLIGCLTENPALFLPHLFGQLVVIFIKIVNAFLSLTRT-NS 509
L + + + GF I V L+ G + +P+ ++ IF+ I++ F+ T NS
Sbjct: 87 LGVFSATFGFLTVCITNVLLIAGVRLKRYIFLIPYFTVCVLFIFVLILHLFVDFLDTANS 146
Query: 510 KS---LRGLLHKALSILIMTFNWMQEFCVFRLFLCVCD 614
K+ ++ +LH + + ++ F V+R F+ +CD
Sbjct: 147 KNTVEMQSILHNTVLLFMICFEVYMLSVVWRAFVYICD 184
>U39745-6|AAA80448.2| 392|Caenorhabditis elegans Hypothetical
protein F41C6.7 protein.
Length = 392
Score = 31.1 bits (67), Expect = 0.73
Identities = 17/90 (18%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Frame = +3
Query: 351 IIATSMGFIQYVCLLIGCLTEN--PALFLPHLFGQLVVIFIKIVNAFLSLTRTNSKSLRG 524
++ ++ F+ ++ +T N P PH+ +V I +K+ F+ L + + +R
Sbjct: 173 VVMMTLAFVNFIQSFDALITGNLNPEFGTPHIIVVIVNIVVKLFLFFVCLIKRENNQIRV 232
Query: 525 LLHKALSILIMTFNWMQEFCVFRLFLCVCD 614
L+ L+ ++ + C+ + CD
Sbjct: 233 LMRDQLTDVLTNSIALVAVCIAHSYWKECD 262
>U50301-12|AAB37053.2| 486|Caenorhabditis elegans Hypothetical
protein F20D6.10 protein.
Length = 486
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +3
Query: 315 NIYNFMIIHDLKIIATSMGFI-QYVCLLIGCLTENPALFLPHLFGQLVVIFIKI 473
N +N +I D +I + + +CL G ++ L LPH+ Q V + +
Sbjct: 89 NHFNVTLIFDYVVILMMVLILFSVLCLFCGVASDTSCLILPHIVVQAVFLLFSV 142
>AL034393-26|CAI59121.1| 936|Caenorhabditis elegans Hypothetical
protein Y18D10A.7c protein.
Length = 936
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -1
Query: 424 NAGFSVKHPISRQTYCMKPIEVAMI 350
N+ F++ +PI R TY +PI+++ +
Sbjct: 188 NSMFNITYPIYRSTYATEPIDISKV 212
>AL034393-25|CAI59120.1| 797|Caenorhabditis elegans Hypothetical
protein Y18D10A.7b protein.
Length = 797
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -1
Query: 424 NAGFSVKHPISRQTYCMKPIEVAMI 350
N+ F++ +PI R TY +PI+++ +
Sbjct: 172 NSMFNITYPIYRSTYATEPIDISKV 196
>AL034393-24|CAA22312.3| 833|Caenorhabditis elegans Hypothetical
protein Y18D10A.7a protein.
Length = 833
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -1
Query: 424 NAGFSVKHPISRQTYCMKPIEVAMI 350
N+ F++ +PI R TY +PI+++ +
Sbjct: 188 NSMFNITYPIYRSTYATEPIDISKV 212
>AF068713-9|AAC17800.1| 284|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 68 protein.
Length = 284
Score = 27.9 bits (59), Expect = 6.8
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Frame = +3
Query: 189 CCQHYTFI--ISYYYTCFYGTVGLFISVHHLKTHLGEQPMASTENIYNFMIIHDLKIIAT 362
C + TF +S +YT F +G IS+ + K ++ ++ + NF+ I +
Sbjct: 32 CSKRVTFKSELSLFYTRFAADIGYSISISNFKLYILAVMISEIFAVKNFIFI--TLWLTI 89
Query: 363 SMGFIQYVCLLIGCLTENPALFLPHLF 443
G I+ L + L +LF P +
Sbjct: 90 IFGIIRTSLLFLTTLDRVISLFFPFFY 116
>U40427-5|AAP82652.1| 356|Caenorhabditis elegans Abnormal cell
migration protein13, isoform b protein.
Length = 356
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 327 FMIIHDLKIIATSMGFIQYVCLLIGCL 407
F+++ II + GFI +VC L CL
Sbjct: 233 FVLLFSATIILSLCGFIMFVCCLCKCL 259
>U40427-4|AAA81470.2| 362|Caenorhabditis elegans Abnormal cell
migration protein13, isoform a protein.
Length = 362
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 327 FMIIHDLKIIATSMGFIQYVCLLIGCL 407
F+++ II + GFI +VC L CL
Sbjct: 239 FVLLFSATIILSLCGFIMFVCCLCKCL 265
>AF150958-1|AAD43178.1| 362|Caenorhabditis elegans guidance protein
MIG-13 protein.
Length = 362
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 327 FMIIHDLKIIATSMGFIQYVCLLIGCL 407
F+++ II + GFI +VC L CL
Sbjct: 239 FVLLFSATIILSLCGFIMFVCCLCKCL 265
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,881,757
Number of Sequences: 27780
Number of extensions: 274030
Number of successful extensions: 722
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -