Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30n06
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo...    69   5e-13
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.1  
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    26   6.4  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    25   8.4  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    25   8.4  

>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 185

 Score = 69.3 bits (162), Expect = 5e-13
 Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
 Frame = +3

Query: 255 YGASRE-RNDLGFLTFDLKTDLSNLFNWNVKQLFLYLTAEYITPSNELNQVVLWDKIILR 431
           Y A R  R     + F++  DLS L++WN K + +YL A Y T  +E NQVV+WDKI+  
Sbjct: 58  YHAFRNVRQQYAQVKFNMDADLSELWDWNTKHVVVYLVASYSTEKHEKNQVVVWDKILSS 117

Query: 432 GENAVLDFKNMNTK---YYFWDDGNGLKGHSNVTLTLSWNIIPNAGLLPNIQALGQHSFK 602
            E + +  K+  +    + F +  N  +G  N T TL W + P  G L      G  S++
Sbjct: 118 PEESKMFMKDTLSNIQAHPFNEYSNQFEG-KNATYTLHWTVSPKMGFLS--WGAGPGSYE 174

Query: 603 FP 608
            P
Sbjct: 175 IP 176


>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 210

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +3

Query: 546 IPNAGLLPNIQALGQHSFKFP-IEYTQTXXXXXXXXXXXXAYLSSVGK*HD 695
           IP A L+P  + L   S++FP ++Y+QT             + S+V + H+
Sbjct: 63  IPRAWLIPFHEFLNNRSYRFPKLDYSQTPIRLAIRSGKKSVHKSAVVRHHN 113


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 259 EHLGNEMILAS*LSILKQICPTSLTGTLNSCSYISLPNTLHQ 384
           E LGN+ I A+   ++K++C  S   T N C  +S  + + Q
Sbjct: 171 EKLGNKSIEANRSPLIKELC-ESANSTENVCFSVSTVDEIQQ 211


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 450 DFKNMNTKYYFWDDGNGLKGHSNVTLTLSWNIIPNAGLLPNIQAL 584
           D +  +TK++     +GL    +  L LSW  + N   L  I+ L
Sbjct: 462 DSEEKSTKWFLQQIDHGLFPFQSTVLILSWLCVENTVTLKKIKML 506


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 613 SIGNLKEC*PRAWMLGNKPALGIIFHDN 530
           S+GNLKE   R + L NK  + I   DN
Sbjct: 435 SLGNLKERYVRQYFLSNKKRIAIYELDN 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,148
Number of Sequences: 5004
Number of extensions: 53262
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)