Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30m20
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0476 - 17922072-17922469,17922546-17923241,17923405-179235...    32   0.44 
01_07_0298 - 42586007-42589742,42590167-42590280,42590295-425904...    31   1.0  
08_01_0098 - 700443-700660,701112-701268,701586-701678,701763-70...    28   5.4  
05_07_0113 + 27767826-27768284                                         28   7.2  
07_03_1723 - 29038701-29039213,29039341-29039413,29039504-290395...    27   9.5  
07_01_0695 + 5251802-5253016                                           27   9.5  
04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814     27   9.5  

>09_04_0476 -
           17922072-17922469,17922546-17923241,17923405-17923569,
           17923670-17924105,17924314-17924739
          Length = 706

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
 Frame = +2

Query: 353 PTIRHRNDILMNSSRAST---FSHGLDNISLMSMNFSHYELMRNLSQ--------ANSNS 499
           P  +  ND ++  +  +T   FS+  + I ++  N   Y  MR +S         ++  +
Sbjct: 99  PVTKQMNDSMVGQNFTNTPYRFSYEDNKIFVIGCNTMAY--MRGVSYVIGCLSTCSDEPT 156

Query: 500 DGTFSGSNCNTATRPVDLNEKNEHLERYFRSAEIWSDRNCG 622
           +G+ SG+ C +   P DL     +  + + +++IW+   CG
Sbjct: 157 NGSCSGAGCCSVDVPPDLGYVEAYFNKDYNTSQIWNYSRCG 197


>01_07_0298 - 42586007-42589742,42590167-42590280,42590295-42590437,
            42591174-42591347
          Length = 1388

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
 Frame = +2

Query: 356  TIRHRNDILMNSSRASTFSHG-LDNISLMSMNFSHYELMRNLSQANSNSDGTFSGSNCN- 529
            T +   D+++ + +A   S G ++N++     F +YE +   S A ++ DGT SG  C+ 
Sbjct: 1214 TSQRVTDVVLMAFQACACSQGCMNNLTFGDDTFGYYETIGGGSGAGASWDGT-SGVQCHM 1272

Query: 530  TATRPVD 550
            T TR  D
Sbjct: 1273 TNTRMTD 1279


>08_01_0098 -
           700443-700660,701112-701268,701586-701678,701763-702149,
           702755-702829,703486-703609,703693-703832,703904-703993,
           704254-704298,704917-705042,705138-705272,705966-706451,
           706539-706596,706728-706855,707209-707463
          Length = 838

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/49 (26%), Positives = 20/49 (40%)
 Frame = +2

Query: 440 SMNFSHYELMRNLSQANSNSDGTFSGSNCNTATRPVDLNEKNEHLERYF 586
           SM  +  +  R  + A+  S   F    C      +DL    EH+ R+F
Sbjct: 645 SMEVNLVDGSRRENTASKESKSNFYSDKCTAYMSNIDLTANEEHIRRFF 693


>05_07_0113 + 27767826-27768284
          Length = 152

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 195 HIILDRLSLLGTNQ*SANPCY 257
           H+  DR++  GT++  ANPCY
Sbjct: 127 HVTRDRMARRGTHKAHANPCY 147


>07_03_1723 - 29038701-29039213,29039341-29039413,29039504-29039594,
            29039684-29039741,29039829-29039905,29040004-29040214,
            29040339-29040386,29042496-29042608,29043270-29043341,
            29044372-29046336,29046434-29046641,29046847-29047165,
            29047813-29047937,29048024-29048157,29049089-29049164,
            29049276-29049428,29049829-29050532,29050636-29050811,
            29050945-29051107,29051199-29051341,29051802-29051914,
            29053113-29053237,29053867-29054016,29054753-29054921,
            29055201-29055418,29055499-29055709
          Length = 2135

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +2

Query: 362  RHRNDILMNSSRASTFSHGLDNISLMSMNFSHYELMRNLSQANSNSDGT 508
            +H+   L    ++S  +  L + S +S ++SH ++  N+S +N  S GT
Sbjct: 1093 QHKYPELPGQLKSSDQTPKLGSSSPLSFSYSHKDVWDNISSSNVPSSGT 1141


>07_01_0695 + 5251802-5253016
          Length = 404

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -1

Query: 600 ISALRKYLSKCSFFSFRSTGRVAVLQLLPLNVPSELEFACDKFRISS 460
           +S+ R  +  C+F    STG   V++LL    P EL + C+   ++S
Sbjct: 160 LSSGRLIMESCAFGKVPSTGEYKVVRLLGSGNPCEL-YECEIMTVNS 205


>04_04_1684 + 35352517-35354642,35354724-35354904,35355794-35355814
          Length = 775

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
 Frame = +2

Query: 143 MENQTLNNEKRFINKARSHNTGPSQFVRNEPVKRKSVLLNET--INSLDLAFGRLKKCRL 316
           +EN  +N E+  +N     ++G      + P+K + +LLN    ++ LD      ++  L
Sbjct: 593 LENYNMNGEQVQLNHDADEHSGD-----DRPIKNEQMLLNHVMGVHDLDNHDQNSEQMLL 647

Query: 317 SNGVGRASTPGSPTIRHRNDILMNSSRASTFSHG 418
           +NG G+ +   S  ++    +L  ++      HG
Sbjct: 648 NNGAGKQAA-DSAQLQEDQMLLDQAADGQATLHG 680


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,782,487
Number of Sequences: 37544
Number of extensions: 300061
Number of successful extensions: 716
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)