Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30m18
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    30   0.38 
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    28   1.5  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    27   2.6  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    27   3.5  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    26   6.1  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    26   6.1  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    26   6.1  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    26   6.1  

>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +3

Query: 285 ENLEQQKQTISSQNKPKKIKTRDEKISGDQQTDKEQTENLVSMMRSYDAKLYGE 446
           +NL+QQK  IS  +   KI    EKI   Q  + E+ + + S     D K  GE
Sbjct: 6   KNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGE 59


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 306 VFVVQDSHLVRISPEFPPPF 247
           V V++DS   R++P  PPPF
Sbjct: 26  VIVIEDSASPRLTPNLPPPF 45


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +1

Query: 313 YHRKTNQKKLKQEMKKYQVISKLIKSKLR 399
           +HRK N ++L++E+K Y+  + LI+  +R
Sbjct: 86  FHRKQNLEQLRRELKAYK--NNLIRESIR 112


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 18/96 (18%), Positives = 36/96 (37%)
 Frame = +3

Query: 288 NLEQQKQTISSQNKPKKIKTRDEKISGDQQTDKEQTENLVSMMRSYDAKLYGEDDTSQPT 467
           NL ++  +    N P  I +    ISG Q +      N      S    +  E  T   +
Sbjct: 379 NLSRRNSSDFGPNSPVNIHSNPVPISGQQPSSPASNSNANFFFGSSPQSMSSE-QTDMMS 437

Query: 468 SRAAPVIPVDAMRKKKKRKRSQITICLANCRYESIR 575
              +P+ P   + ++  R R+     + N + + ++
Sbjct: 438 PITSPLAPFSGVTRRAARTRANSASSVFNSQLQPLQ 473


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +3

Query: 294 EQQKQTISSQNKPKKIKTRDEKISGDQQTDKEQTENLVSMMRSYDAKLYGE 446
           E  KQ   S  K KK + RD  ++ +++ +KE  E    MM +   KLY +
Sbjct: 527 EYVKQNSKSAKKTKK-RQRDT-LTAEEKEEKEAKELSKMMMSNKQRKLYSK 575


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -1

Query: 276 RISPEFPPPFLRDIIISLGIAE--CKSLILHHNSENYKCP*QAD 151
           +I+P  PP F   II    + E   K   + HNS+N+  P Q D
Sbjct: 544 KITPSIPPAFDIHIIEGEELLEEMKKRENVKHNSQNFASPMQTD 587


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 282 DENLEQQKQTISSQNKPKKIKTRDEKISGDQQTDKEQTENLVSMM 416
           D N   +K +   +  PKKIK  D+K+  + Q  +E+ EN+ S +
Sbjct: 10  DVNASTKKYSRGRKLNPKKIK--DKKLRSNIQKIEERIENVESSL 52


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 456 SQPT-SRAAPVIPVDAMRKKKKRKRSQ 533
           S PT SRA  VI VDA   +K+R++ Q
Sbjct: 370 SSPTVSRANSVIDVDAYPPEKRRRKEQ 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,474
Number of Sequences: 5004
Number of extensions: 56157
Number of successful extensions: 201
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)