Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30m18
(711 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0738 + 5458182-5458374,5460512-5461766,5461861-5462053,546... 30 1.6
03_01_0017 - 148934-148999,149000-149074,149343-149408,149737-14... 30 1.6
02_05_0415 + 28787353-28787496,28787658-28788204,28788297-287883... 30 1.6
03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962 30 2.1
01_06_0912 + 32933362-32933515,32933628-32933697,32933893-329340... 30 2.1
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093... 29 2.8
02_02_0622 - 12268569-12269026,12269651-12269745,12270082-12270314 29 2.8
04_04_1093 + 30825722-30826168,30826457-30826608,30826926-308270... 29 3.6
11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903 28 8.4
02_04_0178 + 20672705-20672919,20673385-20673486,20673925-206740... 28 8.4
>06_01_0738 +
5458182-5458374,5460512-5461766,5461861-5462053,
5462151-5462344,5462443-5462601,5462683-5463025
Length = 778
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 540 ICLANCRYESIRKVASAFGMREVSEEDAWNFYWTDMSVSVE 662
+C+ + RKV A G E E +++F +TD + SVE
Sbjct: 514 VCILRNSVKDKRKVFEASGRHEFKTEGSYSFLFTDYNCSVE 554
>03_01_0017 -
148934-148999,149000-149074,149343-149408,149737-149793,
150422-150537,150821-151103,151413-151468,151585-151682,
152233-152291,152747-152818,152892-153077,153303-153305
Length = 378
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +3
Query: 279 RDENLEQQKQTISSQNKPKKIKTRDEKISGDQQTDKEQTEN 401
RD+N + +K+ S+N P +K++ EK ++ +K ++
Sbjct: 174 RDDNSKMEKKVAESENSPATVKSKTEKQQENELHEKRMDDS 214
>02_05_0415 +
28787353-28787496,28787658-28788204,28788297-28788392,
28788532-28788645,28788929-28789962,28790053-28790124
Length = 668
Score = 30.3 bits (65), Expect = 1.6
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 10/115 (8%)
Frame = +3
Query: 267 DLFSRDENLEQQKQTISSQNKPKKIKTRDE----KISGDQQTDKEQTENLV-SMMRSYDA 431
D FS DE ISS +K +KT D+ + S +++ +++ E V S+++S D
Sbjct: 522 DNFSDDETESDATVVISSASKAAVVKTLDDSSVTEASSEEEVSQQEVEASVNSIVKSLDE 581
Query: 432 KLY-----GEDDTSQPTSRAAPVIPVDAMRKKKKRKRSQITICLANCRYESIRKV 581
+ +D+ ++ V A KK++K+ + T+ N S+RK+
Sbjct: 582 FTFTVEGTQKDELTEEMKSTDDAEDVGAKELKKEKKKKKPTVQELNA--TSMRKL 634
>03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962
Length = 279
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -1
Query: 678 SFPSPFRQTHSYQSNRNSKRLLRKPPSYR 592
S P+PF T + S+RN + LLR PP R
Sbjct: 10 SSPAPFPVTTTASSSRNVRLLLRSPPPRR 38
>01_06_0912 +
32933362-32933515,32933628-32933697,32933893-32934035,
32934127-32934637,32934693-32934729,32935254-32935350,
32936774-32937153
Length = 463
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Frame = +3
Query: 294 EQQKQTISS-QNKPKKIKTRDEKISGDQQTDKEQTENLVSMMRSYDAKL---YGEDDTSQ 461
E K+ SS +PKK+ +++ K++ DQ+ +E T K ED +
Sbjct: 113 ESPKEKSSSLAEEPKKLDSQEVKVACDQKQVEEVTTTTAPDSDERSPKTLPPVDEDSPGE 172
Query: 462 PTSRAAPVIPVDAMRKKKKRKRSQ 533
P SR+ + D R ++ ++ Q
Sbjct: 173 PASRSTAPLKKDLPRGLREERKKQ 196
>05_07_0329 -
29308867-29308932,29309040-29309159,29309245-29309364,
29309566-29310123,29310199-29310258,29310839-29310904,
29310993-29311103,29311167-29311257,29311349-29311449,
29311534-29311641,29311737-29314205
Length = 1289
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
Frame = +3
Query: 432 KLYGE-DDTSQPTSRAAPV--IPV----DAMRKKKKRKRSQ 533
KL E DDTS PT A PV +P DA+ KK K+K+ +
Sbjct: 215 KLLAEIDDTSPPTEEAEPVEEVPAPDADDALGKKSKKKKKK 255
>02_02_0622 - 12268569-12269026,12269651-12269745,12270082-12270314
Length = 261
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 669 SPFRQTHSYQSNRNSKRLLRKPPSYRTH 586
SPF QTH + + N++R+LR + T+
Sbjct: 95 SPFSQTHPFVNYHNARRILRHEKKWSTY 122
>04_04_1093 +
30825722-30826168,30826457-30826608,30826926-30827048,
30827240-30827384,30828032-30828093,30828373-30828586,
30829671-30830585,30830827-30831076,30831164-30831432
Length = 858
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 594 RTHWRPFLLTHIGNLQDKLLFVIFSFSFFCALRRPE 487
+T W PF +H G L +F +F SF L +PE
Sbjct: 220 QTSWHPFSSSHFGVLTSDAVFRLFDLSF--DLEQPE 253
>11_06_0755 + 26943705-26944519,26944833-26944839,26945318-26947903
Length = 1135
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +3
Query: 312 ISSQNKPKKIKTRDEKISGDQQTDKEQTENLVSMMRSYDAKLYGEDDTSQ 461
+ S+ K +KT K + + D E +S R + + GE DTS+
Sbjct: 937 VESEEPAKHLKTEKRKYCSNYELDYNLQEMRLSESRDHKRQKIGEGDTSK 986
>02_04_0178 +
20672705-20672919,20673385-20673486,20673925-20674002,
20674046-20674058
Length = 135
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 282 DENLEQQKQTISSQNKPKKIKTRDEKISGDQQTDKEQTENLVSMMRSY 425
D++ +QQKQ +SS+ + KKI I +QT N +++ R Y
Sbjct: 90 DKHYQQQKQDVSSRKQRKKIWIH---IGMSRQTSIPALHNCIALRRWY 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,640,330
Number of Sequences: 37544
Number of extensions: 317318
Number of successful extensions: 1026
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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