Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30m17
         (389 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0502 + 18826595-18826660,18826815-18826885,18828963-188290...    27   7.0  
01_04_0148 + 16818631-16819173,16819264-16819464                       27   7.0  
08_02_0132 + 12908995-12909437,12909727-12910211,12910417-129109...    26   9.2  

>07_03_0502 +
           18826595-18826660,18826815-18826885,18828963-18829056,
           18829575-18831521
          Length = 725

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = -3

Query: 384 FFY*IWRLLFTKLQIIHGRSVSSGTGGLSYI*HGILQHISTQTRIEKFPKS 232
           F   +WR+ + + +I HG+S       +S     I+ ++S+   I++FP++
Sbjct: 490 FLMLLWRIWYNRNEIYHGKSAPP----VSVSHRFIVSYVSSLREIKQFPRA 536


>01_04_0148 + 16818631-16819173,16819264-16819464
          Length = 247

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -3

Query: 333 GRSVSSGTGGLSYI*HGILQHISTQTRIEKFPKSLLKHDTSKTR*RYF 190
           G ++  GTG + +  +G  +    Q R E+   + L+ +T+  R RY+
Sbjct: 149 GANIDVGTGSIRFHINGKEEKFEFQPRTEQCSMNFLEKETTMPRNRYW 196


>08_02_0132 +
           12908995-12909437,12909727-12910211,12910417-12910988,
           12911080-12911211,12912184-12912939
          Length = 795

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -3

Query: 333 GRSVSSGTGGLSYI*HGILQHISTQTRIEKFPKSLLKHDTSKTR*RYF 190
           G ++  GTG + +  +G  +    Q R E+   + L+ +T+  R RY+
Sbjct: 468 GANIDMGTGSIYFHINGKEKKFEFQPRTEQCSMNFLEKETTMPRNRYW 515


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,330,197
Number of Sequences: 37544
Number of extensions: 154063
Number of successful extensions: 254
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 254
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)