Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30m15
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0389 + 2779790-2779891,2780378-2781912,2782087-2782135,278...    27   7.8  
02_02_0643 + 12590928-12592172,12592609-12592698                       27   7.8  

>06_01_0389 +
           2779790-2779891,2780378-2781912,2782087-2782135,
           2782620-2782683,2782755-2782843
          Length = 612

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 463 CHRPAKFQVHGCATVISVAKRK 398
           C R AKF +HGC  V S   R+
Sbjct: 245 CRRLAKFGIHGCDLVTSAGIRR 266


>02_02_0643 + 12590928-12592172,12592609-12592698
          Length = 444

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 522 CISRRVVVQSSP-VFEWLPPYVIDRQSFKCMVVQQLSQ 412
           C  R     SSP  + +LPPYV   + FK   ++QL Q
Sbjct: 378 CPPREPPSDSSPWTWFYLPPYVAFLEWFKTQAIKQLEQ 415


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,126,015
Number of Sequences: 37544
Number of extensions: 241184
Number of successful extensions: 464
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)