Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30m15
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067949-4|AAC19237.1|  415|Caenorhabditis elegans Hypothetical ...    29   1.7  
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    27   9.3  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    27   9.3  

>AF067949-4|AAC19237.1|  415|Caenorhabditis elegans Hypothetical
           protein T10H9.3 protein.
          Length = 415

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
 Frame = -3

Query: 284 QHSAFDTDARVHLNKFHTWSVQ----ANMAD*KTLVRHRSD*KRYQN--AVYLNKTIAQI 123
           +  +FD D +  L +FH+ +VQ     N +D       RS   R Q    VYL + IA +
Sbjct: 90  ERESFDEDVKDKLTQFHSINVQLGHRVNSSDGLRNATERSHLSRVQEGLTVYLKQIIAMV 149

Query: 122 ELL 114
            LL
Sbjct: 150 SLL 152


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
           protein 1 protein.
          Length = 4568

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 217 QTWRIEKRSYAIDQIKNDIKMQFILIKP*HK-LSCSYKEKQHLK 89
           Q W +  +   +D+++ D +MQ  L    H   S  YKE  HLK
Sbjct: 690 QNWTLPNKILTVDRVQVDGRMQLQLKINYHSDSSVLYKEVSHLK 733


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
           protein.
          Length = 4568

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -1

Query: 217 QTWRIEKRSYAIDQIKNDIKMQFILIKP*HK-LSCSYKEKQHLK 89
           Q W +  +   +D+++ D +MQ  L    H   S  YKE  HLK
Sbjct: 690 QNWTLPNKILTVDRVQVDGRMQLQLKINYHSDSSVLYKEVSHLK 733


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,066,121
Number of Sequences: 27780
Number of extensions: 235723
Number of successful extensions: 561
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)