Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30m13
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L13200-8|AAA28188.2|  324|Caenorhabditis elegans Hypothetical pr...    78   5e-15
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l...    29   2.4  
AC084154-8|AAK29877.1|   69|Caenorhabditis elegans Hypothetical ...    29   3.2  

>L13200-8|AAA28188.2|  324|Caenorhabditis elegans Hypothetical
           protein ZK1236.7 protein.
          Length = 324

 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 38/94 (40%), Positives = 56/94 (59%)
 Frame = +2

Query: 416 YEAMKAAFSIXXXXXXXXXXXXXXXXXXXXIGYIKTQKVVLLEDLAAHFKLKTQAAIDRI 595
           Y AMKA+F+I                    + Y+KT KVV +++L++HF LK++ A++R+
Sbjct: 203 YLAMKASFAIEEEGTDAIEGEEAENLIRDFVDYVKTNKVVNIDELSSHFGLKSEDAVNRL 262

Query: 596 TELQASGELTGVIDDRGKFIYISQSELESIAKFI 697
                 G + GV+DDRGKFIYIS  E  ++AKFI
Sbjct: 263 QHFIEEGLVQGVMDDRGKFIYISDEEFAAVAKFI 296


>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
           lipoprotein receptorrelated protein 2 protein.
          Length = 2192

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 4   SCCQTKGCCPKGWRTRSSTSC*ESKGADESECCSAPSC 117
           +C  T+ C PK W+      C  + G+DE   C A  C
Sbjct: 156 ACLATRTCMPKHWQCDGQPDC--ADGSDEKN-CDAKKC 190


>AC084154-8|AAK29877.1|   69|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.10 protein.
          Length = 69

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +1

Query: 25  CCPKGWRTRSSTSC*ESKGADESECC 102
           CCP GW       C  +   DE  CC
Sbjct: 39  CCPDGWEFGGRAPCPANPNMDEVWCC 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,350,985
Number of Sequences: 27780
Number of extensions: 126301
Number of successful extensions: 328
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)