Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30m11
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S...    29   0.98 
SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1 |Schizosacch...    27   3.0  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    27   3.9  
SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch...    27   3.9  
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3...    26   6.9  
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo...    25   9.1  

>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
           Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = -2

Query: 233 HRILKRNPNKLDPLPILKCIVDL*DSTYK 147
           ++++K  PNK+DPL  L  +  + DSTY+
Sbjct: 117 YQLIKILPNKVDPLVSLMMVEKIPDSTYE 145


>SPAC664.09 |ggt1||gamma-glutamyltranspeptidase Ggt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +2

Query: 71  ADFAKEKVFWTRKMNLKLVKFIESRPYMWNPKDPLYTSISAKDQAYSDF 217
           A F  E VF+T K+  +LVKF++ +  +   +D    S+  ++  Y +F
Sbjct: 281 AKFGPE-VFYTGKIAERLVKFVQQQGGILTMEDMANFSVVVEEPIYGNF 328


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 535  HRFNFRITFYFNFIWIVLTMFS 470
            + FN  I FY  F W++L +F+
Sbjct: 1196 YEFNHNIPFYGGFAWLMLMIFT 1217


>SPAC23H4.08 |||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 167 DPLYTSISAKDQAYSDFASKYGDEFSWQAVKE 262
           DPL+  I     A S + + Y DE  WQ   E
Sbjct: 230 DPLHDEIDEDSNAESFYQNSYPDEDEWQDSSE 261


>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -3

Query: 763 ILLGLMGFDWSYLNNISVILCITCAAS*ELISFSFSCYSSAYLTVFC 623
           +L GL+G + +  NN   ++C  C     L S+        Y+ +FC
Sbjct: 181 VLEGLVGANENSENNREALICSHCFHHNGLASYGEKASDVRYVCLFC 227


>SPBC8D2.05c |sfi1||spindle pole body protein
           Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 840

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 296 YLRKIKASRTKRDGEIYKVNWHLW 367
           YL K K+ + KRD  +  + W  W
Sbjct: 487 YLMKAKSFQHKRDHRLLTIAWEAW 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,894,954
Number of Sequences: 5004
Number of extensions: 56329
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)