Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30m11
         (774 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0638 + 26317630-26317971,26318058-26318594,26318954-263197...    31   0.77 
03_05_0952 + 29103879-29103983,29104103-29104600,29104693-291047...    28   7.2  
02_03_0159 + 15822965-15823284,15823314-15823946,15824016-158241...    28   9.5  

>03_05_0638 +
           26317630-26317971,26318058-26318594,26318954-26319722,
           26319802-26319871,26320103-26320268
          Length = 627

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +2

Query: 176 YTSISAKDQAYSDFASKYGDEFSWQAVKERWTNIRSTYNNYLRKIKA 316
           + S S  D+    FASK G  ++   +K +W  +R  YN + +K+K+
Sbjct: 44  HLSNSGYDEVIEQFASKTGLRYTRLQIKNKWDKLRIEYNCW-KKLKS 89


>03_05_0952 +
           29103879-29103983,29104103-29104600,29104693-29104794,
           29105552-29105898,29105967-29106153,29106242-29106417,
           29106976-29107065,29107066-29107322,29107593-29107687,
           29107801-29107920,29108111-29108230,29108410-29108508,
           29108588-29108689,29108884-29109111
          Length = 841

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 167 DPLYTSISAKDQAYS-DFASKYGDEFSWQAVKERWTNIRSTYNNYLRKIKASRTKRDGE 340
           D ++T +SA    Y  DF +K G+E   ++ ++R  ++ S  +  LR     R K D E
Sbjct: 488 DAMFTFVSALCLLYRFDFCAKGGEEEQEESEEKRKVDVVSKLHAILRPFLLRRMKEDVE 546


>02_03_0159 +
           15822965-15823284,15823314-15823946,15824016-15824161,
           15824354-15824875,15825169-15825275
          Length = 575

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 200 QAYSDFAS-KYGDEFSWQAVKERWTNIRSTYNNYLRKIKAS 319
           +A S F S +YG+ FSW    ER+  +RS  +  L K   S
Sbjct: 478 KAKSVFPSDRYGETFSWSDQMERYRMLRSFGSEVLMKCSIS 518


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,681,839
Number of Sequences: 37544
Number of extensions: 294131
Number of successful extensions: 719
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)