Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30m09
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    29   0.72 
SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi...    27   2.9  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   5.0  
SPAC23G3.05c |||regulator of G-protein signaling |Schizosaccharo...    26   6.7  
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    26   6.7  
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase...    26   6.7  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   6.7  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    26   6.7  

>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +3

Query: 141  FVKTCLKSDPEFDDCSRDAVQKLFDALGPGLPEIGMPPLDPLNIPKIRILQG 296
            F++ CL SD   +D    +V K  +A+     E G+    P+N  KIR   G
Sbjct: 1226 FLRKCLPSDEGNEDDESSSVVKSANAIITSFLESGLALTIPINTVKIRYENG 1277


>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 377

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = +3

Query: 501 FEPSNMTIDIVSDIKLYEKDGFVFFNVTAAHVKYSIGGLKLR---MNNLFDGIQSLEEST 671
           FE +   ++I      + K   V F++    V  SI  L+LR   ++ L+  +QSLEE+ 
Sbjct: 33  FEQAKRCLNICCGSNNFAKRNDVLFSLL--DVAVSISSLELRKELISELYVPVQSLEEAP 90

Query: 672 NAYL 683
           + YL
Sbjct: 91  SEYL 94


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 348  FGKTEVLMSQVDSKTYDFYTKVRV 419
            F   EVL S++ SK  D  TKVRV
Sbjct: 1787 FESKEVLTSRMSSKVQDVATKVRV 1810


>SPAC23G3.05c |||regulator of G-protein signaling
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 343

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 303 DPLLAKFLFSEYLMGLVEAYLFPVDLAPKHRIVSVQHHENNHRT 172
           D +L KFLF E++ GL +A +    L  +       HH    R+
Sbjct: 43  DIMLHKFLFREHIRGLYKAGVTSTSLNTESSSTLGPHHFTRFRS 86


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +3

Query: 303 PVNVNAALDNVTVTGFGKTEVLMSQVDSKTYDFYTKVRVPKIRIEGTYDLKGKIL 467
           P+  N   ++   +G  K        D+  ++ ++ ++ PK++ EG+  LKG+ L
Sbjct: 172 PIITNLKTESSKSSGAKKATSNAKITDTMLFNHFSSIQKPKLKAEGS-TLKGQAL 225


>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
           Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 129 TQPDFVKTCLKSDPEFDDCSRDAVQKLF 212
           T  DF+K CL++DP     + DA++  F
Sbjct: 263 TAKDFIKKCLENDPSKRLTAADALKHPF 290


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = -1

Query: 578 IEKYKAVLFIQFDITHDVYCHVTWFKPAFSSADQRYY*NFSF*IIRAFYSNFRHTYFSI 402
           IE+Y A   IQ  +   +Y H  WF  A +  ++R +   SF +  +      H  +S+
Sbjct: 487 IEQYSAKFLIQQAL---LYLHRPWFVRAATRKEEREHYKSSFNLCTSVSHELIHNLYSL 542


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 183 NHRTRGHFSSTFSRNPVEFGNNQHLHDGSLMS 88
           NH  +G  +++FSRN  E  ++ H H  S++S
Sbjct: 152 NHSPKGPTTTSFSRN--ETQSSPHSHSASIIS 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,130,884
Number of Sequences: 5004
Number of extensions: 65102
Number of successful extensions: 175
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)