Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30m09
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41105-12|AAA82406.1|  556|Caenorhabditis elegans Hypothetical p...    31   0.67 
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    29   2.7  
U61947-1|AAB03136.3|  667|Caenorhabditis elegans Thioredoxin red...    29   4.7  
AF148217-1|AAD41826.1|  667|Caenorhabditis elegans thioredoxin r...    29   4.7  
AC006794-5|AAK68502.1|  821|Caenorhabditis elegans Hypothetical ...    29   4.7  
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr...    28   8.2  
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr...    28   8.2  
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p...    28   8.2  
U53338-4|AAA96192.3|  235|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AF317421-1|AAK69599.1|  235|Caenorhabditis elegans lysosomal-ass...    28   8.2  
AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical ...    28   8.2  

>U41105-12|AAA82406.1|  556|Caenorhabditis elegans Hypothetical
           protein T02G5.12 protein.
          Length = 556

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
 Frame = +3

Query: 486 RGKCWFEPSNMTIDIVSDIKLYEKDGFVFFNVTAAHVKYSIGGLKLRMNNLFDGIQSLEE 665
           R + W    ++TI  +     Y+ DG++  ++ A    ++I       + +   +  L++
Sbjct: 424 RNRLWMYNISLTICGIVTAFCYKFDGYILLDIYAVLFGFTIASYVCLTSVILVDLLGLDK 483

Query: 666 STNAY-LNENWRPVSESLRPILSKTIEDI 749
            TNA+ L   W+ V   + P++S  + D+
Sbjct: 484 LTNAFGLLLLWQGVGTVIGPLVSGYLADL 512


>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
           protein 3 protein.
          Length = 3343

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +3

Query: 489 GKCWFEPSNMTIDIVSDIKLYEKDGFVFFNVTAAHVKYSIGGLKLRMNNLFDGIQSLEES 668
           GK     S  T+D +S   + + DGF+F  VT    + +     +R+  +  G+  L  S
Sbjct: 153 GKYELVDSLATVDTMSPFGIVQSDGFLFLEVTGKLDRETRDLYSMRLTAIDQGVPEL--S 210

Query: 669 TNAYLN 686
           ++ +LN
Sbjct: 211 SSCHLN 216


>U61947-1|AAB03136.3|  667|Caenorhabditis elegans Thioredoxin
           reductase protein 1 protein.
          Length = 667

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 28/95 (29%), Positives = 33/95 (34%)
 Frame = +3

Query: 153 CLKSDPEFDDCSRDAVQKLFDALGPGLPEIGMPPLDPLNIPKIRILQGEGPVNVNAALDN 332
           C K  P   + S  A   + D L  G+   GMPP      PK R    E P      L  
Sbjct: 10  CFKRQPRQQEASSPANPHVSDTLSMGVAASGMPP------PK-RPAPAESPTLPGETL-- 60

Query: 333 VTVTGFGKTEVLMSQVDSKTYDFYTKVRVPKIRIE 437
           V   G    E L    +SK   FY      K  +E
Sbjct: 61  VDAPGIPLKEALKEAANSKIVIFYNSSDEEKQLVE 95


>AF148217-1|AAD41826.1|  667|Caenorhabditis elegans thioredoxin
           reductase protein.
          Length = 667

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 28/95 (29%), Positives = 33/95 (34%)
 Frame = +3

Query: 153 CLKSDPEFDDCSRDAVQKLFDALGPGLPEIGMPPLDPLNIPKIRILQGEGPVNVNAALDN 332
           C K  P   + S  A   + D L  G+   GMPP      PK R    E P      L  
Sbjct: 10  CFKRQPRQQEASSPANPHVSDTLSMGVAASGMPP------PK-RPAPAESPTLPGETL-- 60

Query: 333 VTVTGFGKTEVLMSQVDSKTYDFYTKVRVPKIRIE 437
           V   G    E L    +SK   FY      K  +E
Sbjct: 61  VDAPGIPLKEALKEAANSKIVIFYNSSDEEKQLVE 95


>AC006794-5|AAK68502.1|  821|Caenorhabditis elegans Hypothetical
           protein Y50D4A.1 protein.
          Length = 821

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
 Frame = +3

Query: 525 DIVSDIKLYEKDGFVFFN------VTAAHVKYSIGGLKLRMNNLFDGIQSLEESTNAYLN 686
           D++ +  L+  DGF+F++       +A H +    G+ L+   +F    ++EES   +  
Sbjct: 22  DVLPEKGLHNSDGFLFYHASFRPLTSAQHRRAEEHGIDLKTKKVF----TVEESIQVF-- 75

Query: 687 ENWRPVSESLRPILSKTIEDI 749
           ENWR  +      L+K  E I
Sbjct: 76  ENWRKFATEHNMKLAKAPEYI 96


>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = +3

Query: 168  PEFDDCSRDAVQKLFDALGPGLPEIGMPPLD-PLN-IPKIRILQGEG--PVNVNAALDNV 335
            P FDDC+  A+ +  +A+G  L +  +  LD P N  P    +QG+G     VN  L+ +
Sbjct: 3303 PTFDDCNMTALVQEGEAIGHRLLKFSVSDLDGPKNGAPFTVEIQGDGAKSFKVNEKLELL 3362

Query: 336  T 338
            T
Sbjct: 3363 T 3363


>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical protein
            F25F2.2 protein.
          Length = 4307

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = +3

Query: 168  PEFDDCSRDAVQKLFDALGPGLPEIGMPPLD-PLN-IPKIRILQGEG--PVNVNAALDNV 335
            P FDDC+  A+ +  +A+G  L +  +  LD P N  P    +QG+G     VN  L+ +
Sbjct: 3303 PTFDDCNMTALVQEGEAIGHRLLKFSVSDLDGPKNGAPFTVEIQGDGAKSFKVNEKLELL 3362

Query: 336  T 338
            T
Sbjct: 3363 T 3363


>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
            protein F25F2.2 protein.
          Length = 4307

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = +3

Query: 168  PEFDDCSRDAVQKLFDALGPGLPEIGMPPLD-PLN-IPKIRILQGEG--PVNVNAALDNV 335
            P FDDC+  A+ +  +A+G  L +  +  LD P N  P    +QG+G     VN  L+ +
Sbjct: 3303 PTFDDCNMTALVQEGEAIGHRLLKFSVSDLDGPKNGAPFTVEIQGDGAKSFKVNEKLELL 3362

Query: 336  T 338
            T
Sbjct: 3363 T 3363


>U53338-4|AAA96192.3|  235|Caenorhabditis elegans Hypothetical
           protein C05E11.3 protein.
          Length = 235

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 531 RCLLSCYLVQTSIF-LGRPKVLLEFFLLNHTCLLF 430
           RCL +C+ V+T  F +G   VL+  F L H+  ++
Sbjct: 39  RCLCNCFHVKTGAFIIGCVHVLMILFFLIHSLFVY 73


>AF317421-1|AAK69599.1|  235|Caenorhabditis elegans
           lysosomal-associated transmembraneprotein protein.
          Length = 235

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 531 RCLLSCYLVQTSIF-LGRPKVLLEFFLLNHTCLLF 430
           RCL +C+ V+T  F +G   VL+  F L H+  ++
Sbjct: 39  RCLCNCFHVKTGAFIIGCVHVLMILFFLIHSLFVY 73


>AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.19 protein.
          Length = 1256

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +3

Query: 624 RMNNLFDGIQSLEESTNAYLNENWRPVSESLRPILSKTIEDIL 752
           + NNL DG+QSL ++T+     N     + L+PI+S +++  +
Sbjct: 378 QQNNLADGLQSLFKTTDQLSRMN-----DKLKPIVSSSVQQTI 415


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,223,047
Number of Sequences: 27780
Number of extensions: 361186
Number of successful extensions: 1017
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)