Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30m09
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    90   2e-20
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    27   0.25 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    26   0.33 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   7.1  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   9.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.4  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 89.8 bits (213), Expect = 2e-20
 Identities = 64/230 (27%), Positives = 118/230 (51%), Gaps = 8/230 (3%)
 Frame = +3

Query: 72  LKFIIVTLVIHHASADYFRTQPDFVKTCLKSDP--EFDDCSRDAVQKLFDALGPGLPEIG 245
           ++F ++T ++  A A      P+  + C +S P  E++ C  +AV+    +L  GL    
Sbjct: 7   IRFFVLTTMLMMAIAVEL---PNNWRICDRSLPQKEYNQCIAEAVRDAVVSLAGGLKSFK 63

Query: 246 MPPLDPLNIPKIRILQGEGPVNVNAALDNVTVTGFGKT-EVLMSQVDSKTYDFYTKVRVP 422
           + P++PL +  ++I + +G V +     N+ + G  K  E+    +D       ++   P
Sbjct: 64  ILPIEPLAVDSVKIGESQGSVTLRQEYKNIKLYGLTKNLEIKNYNIDWDKCILSSESYNP 123

Query: 423 KIRIEGTYDLKGKILVIPLVGRGKCWFEPSNMTI-DIVS--DI--KLYEKDGFVFFNVTA 587
           ++     Y ++GK+L++P+ G GK     SN+T+ D+ S  DI  + YEK+G  +  +  
Sbjct: 124 QVDFVADYKIEGKVLLLPVRGAGK-----SNITMYDLKSHNDIYCEKYEKNGETYLRIKK 178

Query: 588 AHVKYSIGGLKLRMNNLFDGIQSLEESTNAYLNENWRPVSESLRPILSKT 737
             VK++   +KLR  NLFDG + L E  N ++NEN   + + L+    +T
Sbjct: 179 HAVKFNPAKVKLRFENLFDGNKELGEQMNRFINENSELLFKELQAAYEET 228


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 26.6 bits (56), Expect = 0.25
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = -3

Query: 231 DLAPKHRIVSVQHHENNHRTRGHFSSTFSRNPVEFGNNQH 112
           DL    R  +  + +NNH    H  +  S       NNQH
Sbjct: 407 DLIRNSRCANFDNQDNNHYNHNHNQARHSSKSDNQNNNQH 446


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 194 CCTETIRCFGARSTGNRYASTRPIKYSENKNFAR 295
           C T +I    A S     A T+PIKY+++KN  R
Sbjct: 269 CSTSSIFNLVAISIDRYIAVTQPIKYAKHKNNRR 302


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -2

Query: 460 FPFKSYVPSILIL 422
           F F++Y+PSILI+
Sbjct: 244 FVFQTYLPSILIV 256


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 205 NYSMLWGQ 228
           NYSM WGQ
Sbjct: 262 NYSMYWGQ 269


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +3

Query: 381 DSKTYDFYTKVRVPKIR 431
           +++TYD +  +R+P +R
Sbjct: 173 ENETYDEFDTIRIPIVR 189


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,891
Number of Sequences: 438
Number of extensions: 4524
Number of successful extensions: 19
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)