Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30m04
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    26   0.31 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   6.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   8.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   8.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   8.8  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 25.8 bits (54), Expect = 0.31
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 88  VTGTFFNIVKCSLSVRR*EHQIVSQTYLWSSCFS 189
           VTG F NI  C++ ++    Q  +  YL+S   S
Sbjct: 52  VTGIFGNITTCTVIIKNPAMQTATNYYLFSLAIS 85


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 241 RDASLFRRQVLLCEET 194
           RD SLF    L C+ET
Sbjct: 95  RDCSLFPGNALSCKET 110


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -2

Query: 313 FFQLSHLDGEAEERLICATCVLRLRDASLFRRQVLLCEET 194
           FF  S   G   +  +C  CV  L   +   RQV  C+ T
Sbjct: 529 FFSGSCAPGAPLDSKLCQQCVGNLASNNDRIRQVTKCKAT 568


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -2

Query: 313 FFQLSHLDGEAEERLICATCVLRLRDASLFRRQVLLCEET 194
           FF  S   G   +  +C  CV  L   +   RQV  C+ T
Sbjct: 529 FFSGSCAPGAPLDSKLCQQCVGNLASNNDRIRQVTKCKAT 568


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = -2

Query: 313 FFQLSHLDGEAEERLICATCVLRLRDASLFRRQVLLCEET 194
           FF  S   G   +  +C  CV  L   +   RQV  C+ T
Sbjct: 529 FFSGSCAPGAPLDSKLCQQCVGNLASNNDRIRQVTKCKAT 568


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,426
Number of Sequences: 438
Number of extensions: 2933
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)