Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30l24
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    29   0.58 
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar...    29   0.77 
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    27   2.3  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    27   3.1  
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    26   5.4  
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa...    26   5.4  
SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p...    26   5.4  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    26   5.4  
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    25   7.2  
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    25   7.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.2  
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    25   9.5  

>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 278 PLVVEVNRSKNTLFIISHRSTS 213
           PL+VE+ RS   + ++SHR  S
Sbjct: 510 PLIVEIERSSGNILVVSHRIVS 531


>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 598

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 251 WSDLPPQPVETIQISTKAPTGAIE 322
           W  +PP P  T++I + APT A+E
Sbjct: 458 WHYVPPPPESTVEIVSNAPTLAME 481


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = +2

Query: 476 INMLHLPTTERFLRALILCCQYYLQIADEMANRIIELEAKVRTPDCEIIENEYRD 640
           +NM      ++FL  +IL  + +  + D+M  RI + + K  +    +IEN ++D
Sbjct: 126 VNMNVTLVQKQFLEMVILHLRNFESVTDKMNQRIDKFDGKFNS----VIENSFKD 176


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +1

Query: 460 IKSSID*YASSSHDRKVFESTDSMLPV 540
           IKS  D Y SS+H+++V  +TDSM  V
Sbjct: 56  IKSPSD-YKSSAHEQRVNHTTDSMAHV 81


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 341 LIEQIRFRRRYQRKLQPGQADVIT 412
           L EQ+RFR  YQ+ ++P  + + T
Sbjct: 529 LYEQMRFRDHYQKHVEPSSSHLQT 552


>SPBC776.12c |hsk1||serine/threonine protein kinase
           Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 285 IVSTGCGGKSLQKHPLHHQPSQ 220
           I+   CG  S+ K  L H+PSQ
Sbjct: 380 ILWASCGSASIYKEKLRHKPSQ 401


>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 161

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 521 LILCCQYYLQIADEMANRIIELEAK 595
           LI CC  ++ +    AN I E EAK
Sbjct: 39  LIECCVEFIHLVSSEANEICEKEAK 63


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 296 TKAPTGAIEFRDDVDLIEQIRFRRRYQRK 382
           TK   G + F +D+ + E++  RRR+QRK
Sbjct: 93  TKRSLGLLGFDEDL-VAEEVTARRRFQRK 120


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +2

Query: 536 QYYLQIA-DEMANRIIELEAKVRTPDCEIIENEY 634
           +Y +Q+  DE A R++   A++  PD E ++NEY
Sbjct: 208 RYLIQVGKDEEAVRVLSESAEL-FPDSEEVQNEY 240


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = -1

Query: 336 TSSRNSMAPVGAFVDI*IVSTGCGG---KSLQKHPLHHQPSQYFKKIYLTLPTMMVTNR 169
           TSS+ S +PV     + IV  GC     K+   HP+  Q + +F  + LT P  +   R
Sbjct: 147 TSSKKSESPVEYKAPLTIVCDGCFSKFRKAFIDHPI--QVTDHFLGLILTNPDYIAPGR 203


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +3

Query: 81   KIESNNNLFDHKIKVFEVVDLSKIYVKMIFC 173
            K+E    L DH   + E VD  K+    +FC
Sbjct: 1424 KVEIGRKLLDHLKALLENVDFQKVSSLPLFC 1454


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 437 LQYPLHPEEL*RLPDRVATSFGNACETVSVQLNLH 333
           L Y L+   L R+ +R    F N C+ V ++  LH
Sbjct: 6   LIYKLNHPPLRRIDERNDPLFSNGCKNVHLEAQLH 40


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,640,836
Number of Sequences: 5004
Number of extensions: 54220
Number of successful extensions: 154
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)