Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30l24
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0397 - 17230152-17231453                                         31   1.1  
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284...    30   1.4  
03_01_0371 + 2883418-2883967,2884097-2884176,2886283-2886339,288...    28   7.4  
05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,341...    27   9.8  

>11_04_0397 - 17230152-17231453
          Length = 433

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
 Frame = -1

Query: 603 VRTFASNSIIRFAISSAICK*YWQHRISALKNLSVVGR*SILINTGLNIPTGAVNIAISF 424
           VR F +  ++   +  A C  +W HR         VG  +      L +  GAV++ +S+
Sbjct: 33  VRFFGTTIVLSLGLLHAACSLHWAHRPLP----RGVGTAAFGATAVLCLAVGAVSLLLSW 88

Query: 423 T--S*RVITSA*PGCNFLW*RLRNRIC-SIKSTSSRNSMAPVGAFV 295
           +  +    T A P    +  RL NR+C ++ ++S+   +APVG  V
Sbjct: 89  SAAARMTATKALP-TRRVERRLLNRLCAAVHASSALLMLAPVGLLV 133


>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
            27829243-27829449,27829611-27829704,27829806-27829870,
            27829946-27830398,27830467-27830760,27830837-27831295,
            27831367-27831588,27831755-27831968,27832039-27832494,
            27833280-27833389,27833468-27833644,27833758-27833979,
            27834048-27834167,27834274-27834383,27834552-27834607,
            27835252-27835440,27835602-27835775,27836066-27836281,
            27837066-27837106,27837971-27837986,27838330-27838415,
            27838737-27838910,27839093-27839149,27839720-27840064,
            27840175-27840216,27840377-27840496,27840575-27840724,
            27840830-27841534,27841609-27841954,27842978-27843080,
            27844817-27844860,27845905-27846101,27846322-27846344,
            27846802-27847122,27847406-27847579,27847843-27848047,
            27848817-27848880,27850097-27850278,27850291-27850350,
            27850688-27850748,27851249-27851313,27851491-27851569,
            27851656-27852021,27852442-27852790,27852887-27852989,
            27853103-27853373,27854296-27854405,27854515-27854652
          Length = 3364

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 443  TAPVGILSPVL--INMLHLPTTERFLRALILCCQYYLQIADEMANRI 577
            T+P+ ++ P    IN+  LP+  RF   +++C   YLQ   + + RI
Sbjct: 1887 TSPIKVILPTSCHINISFLPSYYRFTSVILVCIFRYLQSCQDSSARI 1933


>03_01_0371 + 2883418-2883967,2884097-2884176,2886283-2886339,
            2887152-2887207,2888006-2888079,2889511-2889798,
            2890043-2890120,2890359-2890882,2891315-2891438,
            2891619-2891767,2891983-2892137,2892477-2892682,
            2892768-2892901,2892983-2893284,2893514-2893617,
            2893858-2893928
          Length = 983

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = +1

Query: 244  VFLERFTSTTSGNYSDINKSAHWSHRVSRRCRFN*TDTVSQALPKEVATRSGRRYNSSGC 423
            V L    +T + +Y ++N+S   S     R  F   ++V    PKE      R   S GC
Sbjct: 855  VSLNSAPTTPNSSYDNLNESVRRSGLGKHRAGFRRMNSVLAGSPKESDNGGNRISTSGGC 914


>05_01_0431 +
           3412178-3412336,3413012-3413109,3413185-3413312,
           3413770-3413881,3414309-3414489,3414714-3414896,
           3415133-3415315,3416062-3416131,3416413-3416522,
           3416604-3416908,3417079-3417175,3417622-3417765,
           3418217-3418303,3418387-3418473,3418566-3418706,
           3418805-3418930,3419166-3419264,3419690-3419757,
           3420275-3420341,3420713-3420883,3420959-3421048,
           3421831-3421911,3423397-3423470,3423784-3423855,
           3423925-3424017,3424138-3424204
          Length = 1030

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = +3

Query: 111 HKIKVFEVVDLSKIYVKMIFC*LPSL*GVL 200
           H  KVF    LSK Y+  I C LPS   VL
Sbjct: 284 HFKKVFSANGLSKYYIHQIACFLPSCADVL 313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,583,201
Number of Sequences: 37544
Number of extensions: 303660
Number of successful extensions: 662
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)