Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30l23
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...   142   3e-35
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    29   0.83 
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    27   3.3  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    26   5.8  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    26   5.8  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    26   5.8  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    26   5.8  
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa...    25   7.7  

>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score =  142 bits (345), Expect = 3e-35
 Identities = 69/100 (69%), Positives = 83/100 (83%)
 Frame = +1

Query: 379 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASN 558
           MSE  +A++ +EIWKI++L+K L    GNGTSMI+LIIPP +QISR S MLA+E+GTASN
Sbjct: 1   MSE--TAEKAIEIWKIRRLVKQLINCHGNGTSMITLIIPPGEQISRYSNMLAEEYGTASN 58

Query: 559 IKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIV 678
           IKSRVNRLSVL AITS + RLKLY KVP NGLVIYCG ++
Sbjct: 59  IKSRVNRLSVLSAITSTRERLKLYNKVPDNGLVIYCGEVI 98


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = +1

Query: 358 LNKKRNKMSEE--SSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKML 531
           LN+  N +S    SSAD  +E W   K I S + +R   TS  S +  P +    +   L
Sbjct: 10  LNRLNNGLSSNNGSSADEGLEHWNPLKKIHSADSSRRRSTS--SQLNQPSNY--HMHSSL 65

Query: 532 ADEFGTASNIKSRVNRL 582
            +E    S+I S  +R+
Sbjct: 66  HEEVSVGSSIASPSSRI 82


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = -3

Query: 378 FVSLFI*LINHKHYIC-INN*NNVF-AQHQN 292
           F + F+ L +HK+YIC + N NN++  QH +
Sbjct: 197 FSTKFVALSSHKNYICGLTNDNNLYILQHSH 227


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +2

Query: 488 SFHLRIKSREYQRCWLMNLVQLLISSHV 571
           S+  R   R+YQ CW+++++   +S++V
Sbjct: 2   SWFYRFFIRDYQNCWMVSIMGTGLSANV 29


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +2

Query: 488 SFHLRIKSREYQRCWLMNLVQLLISSHV 571
           S+  R   R+YQ CW+++++   +S++V
Sbjct: 2   SWFYRFFIRDYQNCWMVSIMGTGLSANV 29


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +2

Query: 488 SFHLRIKSREYQRCWLMNLVQLLISSHV 571
           S+  R   R+YQ CW+++++   +S++V
Sbjct: 2   SWFYRFFIRDYQNCWMVSIMGTGLSANV 29


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +2

Query: 488 SFHLRIKSREYQRCWLMNLVQLLISSHV 571
           S+  R   R+YQ CW+++++   +S++V
Sbjct: 2   SWFYRFFIRDYQNCWMVSIMGTGLSANV 29


>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
           Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 23  ARRSFDRLFNVIFYSCNV*ILCSTCLGVTE 112
           A+R FD+L NVI +     + C+ C  + +
Sbjct: 12  AKRKFDKLRNVIRFEMPFPVWCNNCENIIQ 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,609
Number of Sequences: 5004
Number of extensions: 58401
Number of successful extensions: 181
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)