Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30l22
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.03 |apt1||adenine phosphoribosyltransferase |Schizosacc...    28   1.4  
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    27   2.5  
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac...    27   3.3  
SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces pomb...    25   7.6  

>SPAC23A1.03 |apt1||adenine phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 268 LSEFEVEYNKVTIAVYREVKGYFV*ATFIFVINSAFYPV 384
           L   E E+N + + V  E +G+    T     N AF PV
Sbjct: 47  LEAVETEFNNIDVIVGLEARGFLFGPTLALRANCAFVPV 85


>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +2

Query: 491 SPVEFLKCRLNKTAFY 538
           SPV FL+C+++K +FY
Sbjct: 339 SPVSFLQCKVDKISFY 354


>SPCC132.02 |hst2||Sir2 family histone deacetylase
           Hst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 58  LHCYDLHRPIHLRPCIQTEPDSQCDSCQ 141
           + CY++    ++R CI  +   +C+SC+
Sbjct: 147 IECYEMAETEYVRACIMQKQVPKCNSCK 174


>SPAC644.04 |pct1||RNA 5'-triphosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 303

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 329 PFTSRYTAIVTLLYSTSNSDRDFTKLKTSK 240
           PF  ++T  V L Y T ++ RD  K++ SK
Sbjct: 145 PFAYKHTKQVDLFYETEDNSRD--KIRVSK 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,591,532
Number of Sequences: 5004
Number of extensions: 49512
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)