Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30l22
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1462 + 37530509-37530874,37531012-37531099,37531352-375314...    29   2.6  
08_01_0601 - 5268520-5271112,5272448-5272950                           28   6.0  
12_02_0809 + 23351784-23352035,23352219-23352386,23353160-233532...    28   7.9  

>01_06_1462 +
           37530509-37530874,37531012-37531099,37531352-37531484,
           37531567-37532326
          Length = 448

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = -2

Query: 662 CYNSNKRNKNNYFF*THVYLCLNSVGTFLLGPKFATFTALDHKRLFC 522
           CY    R+K+ Y    H+YLCL++V T   G KF    A  H++  C
Sbjct: 132 CYIKRNRSKSTY----HLYLCLSNVVT-AEGGKF-VLAAKRHRKTTC 172


>08_01_0601 - 5268520-5271112,5272448-5272950
          Length = 1031

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 217 KLICAER-HLDVFNFVKSLSEFEVEYNKVTIAVYREVK 327
           KL CA + H   +    SL+E E+E N V I  Y E+K
Sbjct: 153 KLPCASKPHRKKYTDWSSLTELEIEDNLVKIGDYDEIK 190


>12_02_0809 +
           23351784-23352035,23352219-23352386,23353160-23353230,
           23353444-23353501,23354117-23354296,23354919-23355003,
           23355091-23355150,23355410-23355483,23355582-23355698
          Length = 354

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = -2

Query: 575 LGPKFATFTALDHKRLFCL---SDILEILQESHLKFKIWKK 462
           +GPKF      +H  +F     ++ +E+L  SHLK ++W++
Sbjct: 255 IGPKF------EHHEMFPARTNTEFVEVLSRSHLKMRVWER 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,159,841
Number of Sequences: 37544
Number of extensions: 267432
Number of successful extensions: 484
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)