Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30l19
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    75   7e-15
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb...    61   2e-10
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    51   1e-07
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    27   2.6  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    27   3.4  
SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual        26   4.5  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    25   7.9  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 75.4 bits (177), Expect = 7e-15
 Identities = 43/111 (38%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
 Frame = +2

Query: 365 ESYSGYFTVNKTYNSNSFFWYFXXXXXXXXXXXXXIWLQGGPGASSLTSLFNEIGPYKVT 544
           + Y+GY  V    + + FFW+F             +WL GGPG SSLT LF E+GP  + 
Sbjct: 587 KQYTGYLDVED--DRHLFFWFFESRNDPENDPVV-LWLNGGPGCSSLTGLFMELGPSSIN 643

Query: 545 HKGNLLPY-PHTWLQNHSLVFIDNPIGTGFSFTDSEDGYVHDMDTYGHHLY 694
            +     Y PH+W  N S++F+D PI TGFS   + D  V D  T G  +Y
Sbjct: 644 IETLKPEYNPHSWNSNASVIFLDQPINTGFS---NGDDSVLDTVTAGKDVY 691


>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 510

 Score = 60.9 bits (141), Expect = 2e-10
 Identities = 27/94 (28%), Positives = 47/94 (50%)
 Frame = +2

Query: 371 YSGYFTVNKTYNSNSFFWYFXXXXXXXXXXXXXIWLQGGPGASSLTSLFNEIGPYKVTHK 550
           ++G+       + + FFW F             +WL GGPG SS      E+GP+++   
Sbjct: 46  HAGHLNQTDQLDGDLFFWMFESVKPEYEHRSI-LWLNGGPGCSSEDGSLMEVGPFRLDDN 104

Query: 551 GNLLPYPHTWLQNHSLVFIDNPIGTGFSFTDSED 652
                 P  W +  +L+F+D P+GTG+S++ ++D
Sbjct: 105 NTFQLNPGRWDELGNLLFVDQPLGTGYSYSLAKD 138


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 51.2 bits (117), Expect = 1e-07
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
 Frame = +2

Query: 365 ESYSGYFTVNKTYNSNSFFWYFXXXXXXXXXXXXXIWLQGGPGASSLTSLFNEIGPYKVT 544
           E YSGY   N   + + F+ Y              +WLQGGPG +     F+E GP +++
Sbjct: 73  ELYSGYLEANS--DKSLFYTY---APAVVDSETFIVWLQGGPGCAGTLGFFSENGPIEIS 127

Query: 545 HKG-NLLPYPHTWLQNHSLVFIDNPIGTGFS 634
               +    P +W    +++++D P GTG+S
Sbjct: 128 QSSPSPSLNPESWTNFANMLWLDQPFGTGYS 158


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 555 IYCLTPTRGCKITRWCSSTTPSGLGSVL 638
           I CL+    C + +W SS+ P+ + S L
Sbjct: 19  IICLSNLPNCPLDQWDSSSVPASISSTL 46


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 128 SVCCKVAVKDKSTKSLNSLED--SKVKELKNDDNQDEETPATDTPKVDNGV 274
           S+  K A +D +  SL S E+   +V      +    E+P TDTP+  NG+
Sbjct: 361 SISLKFAPEDTAHNSLTSQENVGPQVTTTSLSNMTVAESPRTDTPREINGL 411


>SPCC126.08c |||lectin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 620 GTGFSFTDSEDGYVHDMDTYGHH 688
           G  F FTD  +GY   +DTY +H
Sbjct: 116 GPVFGFTDKFNGYGIFIDTYNNH 138


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +2

Query: 473 WLQGGPGASSLTSLFNEIGPYKVTHKGNLLPYPHTWLQNHSLVFIDNPIGT 625
           W Q  P +SSL  +F+ I   K+  +  LL Y  T L++ S +  +  I +
Sbjct: 108 WKQRPPNSSSLEPVFSPIVTAKI--ENALLKYKSTILRHQSPLLANTSISS 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,575,029
Number of Sequences: 5004
Number of extensions: 46936
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)