Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30l19
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.6  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   2.8  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    23   2.8  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    23   2.8  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    23   3.7  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    23   3.7  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   3.7  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    23   3.7  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    23   3.7  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    23   3.7  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    23   3.7  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   4.9  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +2

Query: 512 LFNEI-GPYKVTHKGNLLPYPH 574
           LFN   G Y+V +K N+L YP+
Sbjct: 115 LFNNADGNYEVRYKSNVLIYPN 136


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 179 SLEDSKVKELKNDDNQ 226
           S  D K K+L+N+DN+
Sbjct: 9   SYHDEKFKQLRNEDNK 24


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 158 KSTKSLNSLEDSKVKELKNDDNQ 226
           K   S  S  D K K+L+N+DN+
Sbjct: 2   KRNISSYSHHDEKFKQLRNEDNE 24


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 179 SLEDSKVKELKNDDNQ 226
           S  D K K+L+N+DN+
Sbjct: 9   SYHDEKFKQLRNEDNK 24


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +2

Query: 179 SLEDSKVKELKNDDNQDEETPATDTPKVDNGVALILTPYIEEGRLNEAREDSRVDRSLFF 358
           S  D K K+L+N+DN+ +    T   ++ +   + L   I++ R    RE  R+ + +  
Sbjct: 9   SHHDEKFKQLRNEDNKIDLRSRTKEERLQHRREVWL---IQQER---EREHERLMKKMIL 62

Query: 359 GYE 367
            YE
Sbjct: 63  EYE 65


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +2

Query: 179 SLEDSKVKELKNDDNQDEETPATDTPKVDNGVALILTPYIEEGRLNEAREDSRVDRSLFF 358
           S  D K K+L+N+DN+ +    T   ++ +   + L   I++ R    RE  R+ + +  
Sbjct: 9   SHHDEKFKQLRNEDNKIDLRSRTKEERLQHRREVWL---IQQER---EREHERLMKKMIL 62

Query: 359 GYE 367
            YE
Sbjct: 63  EYE 65


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +2

Query: 179 SLEDSKVKELKNDDNQDEETPATDTPKVDNGVALILTPYIEEGRLNEAREDSRVDRSLFF 358
           S  D K K+L+N+DN+ +    T   ++ +   + L   I++ R    RE  R+ + +  
Sbjct: 9   SHHDEKFKQLRNEDNKIDLRSRTKEERLQHRREVWL---IQQER---EREHERLMKKMIL 62

Query: 359 GYE 367
            YE
Sbjct: 63  EYE 65


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +2

Query: 179 SLEDSKVKELKNDDNQDEETPATDTPKVDNGVALILTPYIEEGRLNEAREDSRVDRSLFF 358
           S  D K K+L+N+DN+ +    T   ++ +   + L   I++ R    RE  R+ + +  
Sbjct: 9   SHHDEKFKQLRNEDNKIDLRSRTKEERLQHRREVWL---IQQER---EREHERLMKKMIL 62

Query: 359 GYE 367
            YE
Sbjct: 63  EYE 65


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +2

Query: 179 SLEDSKVKELKNDDNQDEETPATDTPKVDNGVALILTPYIEEGRLNEAREDSRVDRSLFF 358
           S  D K K+L+N+DN+ +    T   ++ +   + L   I++ R    RE  R+ + +  
Sbjct: 9   SHHDEKFKQLRNEDNKIDLRSRTKEERLQHRREVWL---IQQER---EREHERLMKKMIL 62

Query: 359 GYE 367
            YE
Sbjct: 63  EYE 65


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +2

Query: 179 SLEDSKVKELKNDDNQDEETPATDTPKVDNGVALILTPYIEEGRLNEAREDSRVDRSLFF 358
           S  D K K+L+N+DN+ +    T   ++ +   + L   I++ R    RE  R+ + +  
Sbjct: 9   SHHDEKFKQLRNEDNKIDLRSRTKEERLQHRREVWL---IQQER---EREHERLMKKMIL 62

Query: 359 GYE 367
            YE
Sbjct: 63  EYE 65


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +2

Query: 179 SLEDSKVKELKNDDNQDEETPATDTPKVDNGVALILTPYIEEGRLNEAREDSRVDRSLFF 358
           S  D K K+L+N+DN+ +    T   ++ +   + L   I++ R    RE  R+ + +  
Sbjct: 9   SHHDEKFKQLRNEDNKIDLRSRTKEERLQHRREVWL---IQQER---EREHERLMKKMIL 62

Query: 359 GYE 367
            YE
Sbjct: 63  EYE 65


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 179 SLEDSKVKELKNDDNQ 226
           S  D K K+L+N+DN+
Sbjct: 9   SHHDEKFKQLRNEDNK 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,510
Number of Sequences: 438
Number of extensions: 3365
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)