Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30l17
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0137 - 5730778-5730873,5732137-5732334,5732413-5732625,573...    29   4.1  
04_03_0278 - 13761999-13762462,13762628-13762727,13763065-137632...    29   4.1  
04_04_0805 + 28184394-28185239                                         28   7.2  

>10_02_0137 -
           5730778-5730873,5732137-5732334,5732413-5732625,
           5732748-5732870,5733726-5733841,5734530-5734897,
           5735498-5735649,5736557-5736715,5737773-5737946
          Length = 532

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +3

Query: 240 ARLVVVARVDLCGAPYSIYEAACVHRT--SNCTHALMATLGA 359
           A LV+ A  + CG+P  +Y  +C H T  S+C  + MA  GA
Sbjct: 4   ADLVLKAACEGCGSPSDLYGTSCKHTTLCSSCGKS-MALSGA 44


>04_03_0278 -
           13761999-13762462,13762628-13762727,13763065-13763289,
           13763347-13763415,13763605-13764432,13764706-13764779,
           13818821-13818905
          Length = 614

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 393 WPYIIAAIYPALRRVSPLTHACNCSFCGRMQPRR 292
           WPY+I A +PAL   + +T A   +  G +   R
Sbjct: 486 WPYLIPACFPALPATASVTAAIKTAAAGLVDHHR 519


>04_04_0805 + 28184394-28185239
          Length = 281

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 165 WPFCNLAFVKHSTYHLLYAGALKFLLKQFI 76
           WP  N  F   S Y+LL+AG  + LL + I
Sbjct: 103 WPAKNGTFSVKSAYYLLFAGRTRCLLGKII 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,433,918
Number of Sequences: 37544
Number of extensions: 336387
Number of successful extensions: 775
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)