Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30l14
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp...   113   2e-26
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    53   5e-08
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    29   0.64 
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    27   2.6  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    25   7.8  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    25   7.8  
SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce...    25   7.8  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   7.8  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   7.8  

>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
           Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score =  113 bits (272), Expect = 2e-26
 Identities = 55/158 (34%), Positives = 90/158 (56%), Gaps = 1/158 (0%)
 Frame = +1

Query: 226 HSKLLKKCLINLPKSYECLDASRTWIIYWILHSLWILNDMPDHETLSAVVKFLDQCQHED 405
           H K L K L  LP  +  LDASR W++YW L SL IL  + D       +  + Q +   
Sbjct: 34  HLKYLTKMLDPLPSPFTVLDASRAWMVYWELSSLAILGKL-DSSVCERAISSVRQLKGPS 92

Query: 406 GGYGGGPRQYPHLGTTYAAVNALSIIGTDEAYDSIDRSSLQRFLWTVRDVDGSFALHKDG 585
           GG+ GG  Q  HL +TYA++ ++ +  + +AY  I+R  L  +L+++++ DGSF ++ +G
Sbjct: 93  GGFCGGNGQDEHLLSTYASILSICLCDSTDAYSLIERDRLYDWLFSLKNPDGSFRVNNEG 152

Query: 586 EQDIRGAYCAISIAKMTN-TYTEALFDKTAEWIVSCQT 696
           E D R  Y A+ ++ +   +  + LF+ T +W+  CQT
Sbjct: 153 ESDARSVYAAVCVSSLVGISMDDPLFEGTLQWLCKCQT 190



 Score = 32.7 bits (71), Expect = 0.052
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 349 DHETLSAVVKFLDQCQHEDGGYGGGPRQYPHLGTTYAAVNALSIIG 486
           D       +++L +CQ  +GG  G P    H G T+ A+ A++++G
Sbjct: 174 DDPLFEGTLQWLCKCQTYEGGLSGVPYAEAHGGYTFCALAAIALLG 219


>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 52.8 bits (121), Expect = 5e-08
 Identities = 32/129 (24%), Positives = 56/129 (43%)
 Frame = +1

Query: 304 IYWILHSLWILNDMPDHETLSAVVKFLDQCQHEDGGYGGGPRQYPHLGTTYAAVNALSII 483
           IYW   S W+L    D      +V FL  C  E GG+   P    H+  T  AV  L+++
Sbjct: 36  IYWSCMSFWLLKKK-DQIDKERIVSFLLSCLTESGGFACYPGHDDHITNTVYAVQVLAML 94

Query: 484 GTDEAYDSIDRSSLQRFLWTVRDVDGSFALHKDGEQDIRGAYCAISIAKMTNTYTEALFD 663
              ++   +D+  +  ++  +++ DGS    + GE D R  Y  I+   +         +
Sbjct: 95  ---DSLHVVDKDKVASYIIGLQNEDGSMKGDRWGEIDARFLYSGINCLAILGKLDYLNKN 151

Query: 664 KTAEWIVSC 690
              +W++ C
Sbjct: 152 TAVDWLMKC 160



 Score = 29.5 bits (63), Expect = 0.48
 Identities = 16/64 (25%), Positives = 27/64 (42%)
 Frame = +1

Query: 502 DSIDRSSLQRFLWTVRDVDGSFALHKDGEQDIRGAYCAISIAKMTNTYTEALFDKTAEWI 681
           D ID+  +  FL +     G FA +   +  I     A+ +  M ++      DK A +I
Sbjct: 50  DQIDKERIVSFLLSCLTESGGFACYPGHDDHITNTVYAVQVLAMLDSLHVVDKDKVASYI 109

Query: 682 VSCQ 693
           +  Q
Sbjct: 110 IGLQ 113


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 373 VKFLDQCQHEDGGYGGGPRQYPHLGTTYAAVNALSII 483
           ++++  CQ  +GG+   P    H G T+ A+ + S+I
Sbjct: 173 IQYIKSCQRYEGGFSLLPYGEAHAGATFCALASWSLI 209


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 493 EAYDSIDRSSLQRFLWTVRDVDGSFALHKDGEQDIRGA 606
           E + ++D+ S  R  W  RD+    A+ K   +DI+GA
Sbjct: 20  EVHPNVDKKSFIR--WRQRDIHEKRAVRKQKMEDIKGA 55


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 622 IAKMTNTYTEALFDKTAEWI 681
           ++K++NTY   L DK+ E++
Sbjct: 455 VSKLSNTYFRCLHDKSVEYV 474


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 254 SICQKVMNALMLAEPGSYIGFYIHYGFLMTCPTMR 358
           S C+++  AL       Y+G+YIH     TCP M+
Sbjct: 198 SACREIWLALECGYRYYYMGYYIH-----TCPKMK 227


>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = -3

Query: 103 IMKHTNFFKS*SVGFHCFRH--YCYNFYSS 20
           +++ T+F K    GF+ F H  Y Y F SS
Sbjct: 307 LIRKTSFLKKKQRGFYAFTHSGYLYEFKSS 336


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 502 DSIDRSSLQRFLWTVRDVDGSFALHKDGEQDIRGA 606
           DS  RSS Q    ++ D  G  +L  DG+ D RG+
Sbjct: 105 DSSKRSSSQDEFESLFDRYGQLSLKDDGKADFRGS 139


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 106 YNEFMLPIWIYVEKTILKLYKEFEKNSSID 195
           YN  M+PI +YV   I+++++ F   S ID
Sbjct: 626 YNT-MVPISLYVSMEIIRVFQTFLVQSDID 654


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,852,315
Number of Sequences: 5004
Number of extensions: 60484
Number of successful extensions: 170
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)