Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30l09
(707 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 29 0.86
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 28 1.1
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ... 28 1.1
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 28 1.5
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom... 27 3.5
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 27 3.5
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 26 4.6
SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9 |Schizo... 26 4.6
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 26 4.6
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 25 8.0
SPAC1B3.07c |vps28||ESCRT I complex subunit Vps28|Schizosaccharo... 25 8.0
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 25 8.0
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p... 25 8.0
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.7 bits (61), Expect = 0.86
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +1
Query: 172 REGRTRSMAVMMELEESVSDSKLHKESTAKKDLRPSSAISFSKSDHGPETT 324
+EG+ A+ + ++ + S+L +T + SS +SFS+ HG +T+
Sbjct: 447 KEGKNSENAITKDNDDIILSSQLQPTATGSR----SSRLSFSRHGHGSQTS 493
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 28.3 bits (60), Expect = 1.1
Identities = 24/82 (29%), Positives = 37/82 (45%)
Frame = +1
Query: 427 FMIKGGGFPAIRRAMLERGWVEKYESHKVRHPPTNVDPKKASGKELSKVERMILYKFMEH 606
F K G + IR E G + +SH +PP V PK +S ++ KVER+ +Y
Sbjct: 835 FNYKKGEY-LIRHFSYENGILTMKDSHS--NPP--VSPKYSSSQKHLKVERINIYGEQTR 889
Query: 607 HSVDFLWTTKRDKYDWLLSNKD 672
S+ + +W +S D
Sbjct: 890 KSIKIRKIIDSEVTEWDVSVDD 911
>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
Str2 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 317 SGP*SDLENEIALEGLKSFLAVLSLWSLES 228
+GP +D +E++LEG+ A+ S WS S
Sbjct: 35 AGPINDRTSELSLEGVSKAEAIASTWSKRS 64
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 27.9 bits (59), Expect = 1.5
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 11/82 (13%)
Frame = +1
Query: 148 TRSQKFQKREGRTRSMAVMMELEESVSDSKLHKESTAKKDLRPS--------SAISFSKS 303
++SQK +EGR+ L S S S++ K S AK + P A S +KS
Sbjct: 415 SKSQKSSNKEGRSSRGGFFSRLSFSRSSSRMKKGSKAKHEDAPDVPAIPHAYIADSSTKS 474
Query: 304 DH--GPETTSSTE-QLRQYKSW 360
+ G +T + T+ +++Q+ +W
Sbjct: 475 SYRNGKKTPTRTKSRMQQFINW 496
>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 605
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 220 SVSDSKLHKESTAKKDLRPSSAISFSKSDHGPETTSSTEQLRQYKSW--VSNERWNELKK 393
S D+ L + +T KD+ A F + + P+T ST L +Y ++ +R N+ +K
Sbjct: 472 STPDTPLKEFTTTLKDVDNEQASEFYQLEKEPDTVPSTFILHRYYTYRIFVEDRANKTRK 531
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +1
Query: 151 RSQKFQKREGRTRSMAVMMELEESVSDSKLH--KESTAKKDLRPSSAISFS 297
+ +K +K+E + R +A M+E E +D+ ++ A KD PS + F+
Sbjct: 193 KDRKTRKKEEKARKLASMLESENKDNDANAAPLNKTDAFKDGLPSGRLIFA 243
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +1
Query: 487 VEKYESHKVRHPPTNVDPKKASGKELSKVERMILYKFMEHHSVDF 621
+ + E H + HP N K SK+E + Y F+ + +DF
Sbjct: 440 IAEIEVHSLEHPANNESLVK------SKLEEAVFYSFLPGNPIDF 478
>SPAC19G12.11 |coq9||ubiquinone biosynthesis protein Coq9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 26.2 bits (55), Expect = 4.6
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = +1
Query: 523 PTNVDPKKASGKELSKVERMILYKFMEHHSVDFLWTTKRDKYDWLLSNKDVMISR 687
P+N+ +S ELS ILY + S DF W TKR + S ++ +SR
Sbjct: 150 PSNLRKSLSSLAELSDE---ILY-LAQDKSADFQWYTKRAAISAIYSASELFMSR 200
>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 629
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = -3
Query: 501 FIFFYPASFKHGSTYCWETAAFNHENLTLFHRC 403
+I +P ++K+ + WE A + +L H+C
Sbjct: 595 YIEEHPLAYKNPNATTWEMAGYTWPKNSLMHKC 627
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +1
Query: 211 LEESVSDSKLHKESTAKKDLRPSSAISFSKSDHGPETTSSTEQLRQYKSWVS 366
+E++ SD++L ++ AK+DLRP+ ++ KS T Q K V+
Sbjct: 37 IEDAESDAELPQD--AKEDLRPTETLTPLKSKAAQNGILKTPGTLQIKKTVN 86
>SPAC1B3.07c |vps28||ESCRT I complex subunit
Vps28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/52 (21%), Positives = 25/52 (48%)
Frame = +1
Query: 181 RTRSMAVMMELEESVSDSKLHKESTAKKDLRPSSAISFSKSDHGPETTSSTE 336
R + + ++E +SD + ST + ++ S + +D P+T + T+
Sbjct: 93 RLQCPRAIKRIQEGISDERSQSNSTFSNAISTTAEPSIAMNDTTPQTVNPTK 144
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 502 SHKVRHPPTNVDPKKASGKELSK 570
SH + HP T K GKELS+
Sbjct: 616 SHLLHHPSTKRSHKMLEGKELSQ 638
>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 340
Score = 25.4 bits (53), Expect = 8.0
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = +1
Query: 526 TNVDPKKASGKELSKVERMILYKFMEHHSVDFLWTTKRDKY--DWLLSNKDVMISRFC 693
TNV PKK G+ ++RM+ H+SVD L K +Y S +D+M+ RFC
Sbjct: 188 TNV-PKKEIGRVYKTLQRMLTEGGALHNSVDAL---KGHEYIQSSSTSAEDLMV-RFC 240
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,945,383
Number of Sequences: 5004
Number of extensions: 61164
Number of successful extensions: 180
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -