Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30l08
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    32   0.077
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom...    28   1.7  
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc...    28   1.7  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    27   2.2  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    27   2.2  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   3.8  
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    26   6.7  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   8.9  

>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 32.3 bits (70), Expect = 0.077
 Identities = 14/62 (22%), Positives = 31/62 (50%)
 Frame = +2

Query: 275 DIKYDKIFLDNKNLVKFIEKCFALENSDGMARIVNRTLLGLYQNTCPEYKSSHRFQNILD 454
           D+ Y++I +   + ++ +       N+D M  + N    GL++   PE + S ++ ++L 
Sbjct: 77  DVTYEEIIIQRNHAIELLRSASHDNNTDAMLYLANIEFFGLFE-IIPEIEDSVKYYDMLQ 135

Query: 455 NA 460
            A
Sbjct: 136 KA 137


>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +2

Query: 308 KNLVKFIEKCFALENSDGMARIVNRTLLGLYQNTCPEYKSSHRFQNILDNAFMKLELDP 484
           KN +  + K   +  +DG+        L   +   PEY      + ILDNA +K+  DP
Sbjct: 205 KNNITVVHKATIMRMADGL-------FLECAKELAPEYPDIELREEILDNACLKIVTDP 256


>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 398 YQNTCPEYKSSHRFQNILDNAFMKLELDPKH 490
           Y N    Y    +F+N +++A   L LDP H
Sbjct: 120 YSNRAAAYNQLGQFENAVEDALTCLSLDPHH 150


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -1

Query: 657 NLDFFFETPSTGDLL*RAVSSFNLS 583
           N D  FETP  GD L  AV +FN++
Sbjct: 420 NTDNLFETPDEGDGLSSAVFNFNVA 444


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 8/19 (42%), Positives = 16/19 (84%)
 Frame = -1

Query: 408 VFWYKPNNVRLTILAIPSE 352
           + W+KP++ R+ ++AIP+E
Sbjct: 481 IVWFKPSDKRVPLIAIPTE 499


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 684  PLSSKFIKLNLDFFFETPSTGDL 616
            P+S + IK++LDF   +P+ GD+
Sbjct: 2156 PISYQEIKVDLDFALRSPNPGDI 2178


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 421 QKFTSVSKYFGQCLYEVRVRSKTQVLAHKRC 513
           +K   ++KY  Q LY V     T VL H  C
Sbjct: 22  KKLLPITKYRNQLLYAVEQNQITIVLGHTGC 52


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 693 MFAPLSSKFIKLNLDFFFETPSTGDLL*RAVSSFNLSC 580
           +F P S +   L +D   + P   DL    V S+ +SC
Sbjct: 13  VFLPFSKRVENLKIDVAHKIPRAADLEDEDVESYFISC 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,923,361
Number of Sequences: 5004
Number of extensions: 60297
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)