Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30l08
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0633 - 5484442-5484874,5485137-5485465                           28   7.0  
11_06_0145 - 20615044-20617167,20617444-20618076                       28   9.3  
06_03_1481 - 30436904-30437059,30437150-30437221,30437559-304379...    28   9.3  

>08_01_0633 - 5484442-5484874,5485137-5485465
          Length = 253

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 236 DDDVGHPSTRQTCDIKYDKIFLDNKNLVKFIEKCFALENSD 358
           DD +  P+  Q   I    +++  K L KF++ C  LE  D
Sbjct: 156 DDPLVIPTMHQLRQIALGSLYISRKTLTKFVDSCPHLELLD 196


>11_06_0145 - 20615044-20617167,20617444-20618076
          Length = 918

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = -1

Query: 450 KIF*NRCELLYSGHVFWYKPNNVRLTILAIPSEFSRAKHFSINFTKFLLSKNILSYFMSQ 271
           +IF    +L Y GH   Y P N+   +L  P E         N    +  +N L Y +++
Sbjct: 308 EIFKQNADLDYLGHKHVYLPRNISAELLGSPLELVTIGKAMHNKKDAIYWQNALHY-LTE 366

Query: 270 VCL 262
            CL
Sbjct: 367 SCL 369


>06_03_1481 -
           30436904-30437059,30437150-30437221,30437559-30437902,
           30438014-30438137,30438244-30438386,30438792-30438927,
           30439469-30439818,30440458-30440542
          Length = 469

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
 Frame = +2

Query: 251 HPSTRQTC--DIKYDKIFLDNKNLVKFIEKCFALENSDGMARIVNRTLLGLYQNTCPEY 421
           H S RQ    D K   I LD+    K  +   A    DG    V   ++G Y    PEY
Sbjct: 218 HSSERQIIYRDFKASNILLDSNFNAKLSDFGLAKHGPDGGLSHVTTRVMGTYGYAAPEY 276


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,980,813
Number of Sequences: 37544
Number of extensions: 321645
Number of successful extensions: 658
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)