Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30l06
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    28   0.71 
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   3.8  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    25   5.0  
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    25   6.6  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    25   8.7  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    25   8.7  

>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 17/66 (25%), Positives = 34/66 (51%)
 Frame = -1

Query: 304 VSIGFDIPTVMTDRYSSFVKGSNRTRRLAYS*HSIVNCDQRSSAAARSTISGGVTGRWAS 125
           +SI  D+PT   D +  +  G+    + + +     + +   S  A STISGG+    ++
Sbjct: 83  ISISSDLPT---DGWQIYFNGATSQNQGSLAQSEQFDFEGSDSTLAASTISGGIYSSTSA 139

Query: 124 AATASN 107
           ++T+S+
Sbjct: 140 SSTSSS 145


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
 Frame = +2

Query: 8   DKISKYRKFTVQNKSKMCDRMDAINKLQTVMSAIRGG----CSGCPSPCNSTRNCTPCCS 175
           D I +Y K  ++ +  M        K+ + +S +R      C     P NS      C S
Sbjct: 720 DFIMQYAKGILECQPGMDQEATLEAKISSTLSKVRDDVGEICMDELGPANSPLIMATCGS 779

Query: 176 GGSLVTVYNAVLAIGQ 223
            GS + V   V  +GQ
Sbjct: 780 KGSKINVSQMVACVGQ 795


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 96  LCPQFEAVAADAHRPVTPPEIVLRA 170
           L  +FE + AD  RP TPP  + RA
Sbjct: 628 LINEFENLFADLERPSTPPVEIERA 652


>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 8/32 (25%), Positives = 21/32 (65%)
 Frame = -1

Query: 133 WASAATASNCGHNSL*FINSIHAITHFRFILY 38
           +AS+   +NC   ++ F+ +I  ++++ ++LY
Sbjct: 15  FASSDKPNNCSRKNMFFLKNIIVLSNYLYLLY 46


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 20/65 (30%), Positives = 27/65 (41%)
 Frame = -1

Query: 430 FANINKIQYTDSQNYTTFATNTEHISRTL*H*QHNLISRVRLVSIGFDIPTVMTDRYSSF 251
           F NI     TDS   TT     +H   T+ H  H+L  R ++ S   DI      RY   
Sbjct: 337 FDNIEWTLPTDSP--TTAPRIAKHTYETIYHQWHSLRIREQIASFMLDIADHNVKRYGKS 394

Query: 250 VKGSN 236
            + S+
Sbjct: 395 EESSS 399


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
 Frame = -2

Query: 456 RVLQQMSSNLQILTRYNTQ----IHKIILLLPLTQNIFLGHYNINNI 328
           ++L++++ NLQI T Y TQ    +   I +L ++++ +  H++ + I
Sbjct: 587 KLLKKVNRNLQIKTNYPTQEFHLLRPTIKILQISKHEYFLHFSSSYI 633


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,067,039
Number of Sequences: 5004
Number of extensions: 39561
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)