Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30l06
         (511 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical pr...    31   0.64 
AF068713-16|AAD34663.1|  156|Caenorhabditis elegans Ground-like ...    30   0.85 
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    28   4.5  
AC024838-8|AAF60822.1|  234|Caenorhabditis elegans Thaumatin fam...    28   4.5  
U41279-3|AAK31422.1|  210|Caenorhabditis elegans Helix loop heli...    27   7.9  

>U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical
           protein C46A5.4 protein.
          Length = 1432

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 2   TKDKISKYRKFTVQNKSKMCDRMDAINKLQTVMSAIRGGCSGCPSPCNST 151
           T D+I + RK T+     +CD  D +  +Q    ++      CP  CNST
Sbjct: 588 TVDQIDEIRKTTMARI--ICDNTDTVTHVQHHAFSLPDDYGNCPLSCNST 635


>AF068713-16|AAD34663.1|  156|Caenorhabditis elegans Ground-like
           (grd related) protein31 protein.
          Length = 156

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 12/27 (44%), Positives = 12/27 (44%), Gaps = 4/27 (14%)
 Frame = +2

Query: 113 GGCSGCPSPCNSTRNCT----PCCSGG 181
           GGC GC   C     C     PCC GG
Sbjct: 31  GGCGGCGGGCGGGCGCAPPPPPCCGGG 57


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 110 RGGCSGCPSPCNSTRNCTPCCS 175
           RGGC GCP+P    R   PC +
Sbjct: 24  RGGCGGCPTPMCQPR--MPCAA 43


>AC024838-8|AAF60822.1|  234|Caenorhabditis elegans Thaumatin family
           protein 6 protein.
          Length = 234

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 104 AIRGGCSGCPSPCNSTRNCTPCCSG 178
           ++     GC SPC++ R+   CC G
Sbjct: 161 SVNNNVVGCRSPCDALRSDRECCRG 185


>U41279-3|AAK31422.1|  210|Caenorhabditis elegans Helix loop helix
           protein 26 protein.
          Length = 210

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +2

Query: 26  RKFTVQNK---SKMCDRMDAINKLQTVMSAIRGGCSGCPSPC 142
           RKF   N    S+  D+M+ +  L+ +   IRG    C  PC
Sbjct: 105 RKFIALNNLSSSEEIDKMENLKVLEIIFEVIRGKSITCTVPC 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,746,508
Number of Sequences: 27780
Number of extensions: 243072
Number of successful extensions: 738
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)