Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30l05
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch...    27   2.7  
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p...    27   3.6  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    27   3.6  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    26   4.7  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    26   4.7  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    25   8.3  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    25   8.3  
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po...    25   8.3  

>SPBC30D10.08 |mgm101||mitochondrial nucleoid
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 267

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 286 IKEFNRENCVSMFV*RLIFLSKTEKRELQGRRK 384
           I+ F RENCV +FV  ++    T+KR    RRK
Sbjct: 228 IRVFKRENCVEVFVENVL----TKKRRKLWRRK 256


>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 254

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 470 TINGYGSSRGASVRISNKDGMSMEERGFMICSSHGTMINL-K*VNGLEEL 616
           T + YG S+ A      +    +E+ GF++ S H  ++N    VN +++L
Sbjct: 155 TYSAYGQSKAALNYTMKEISFELEKDGFVVVSIHPGVVNTDMFVNAMQKL 204


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 407 TIINHWKGLIRKNTKFVFPQTTINGYGSSRGASVRISN 520
           T  N+W G++  N     P+T  N + +S   + +I N
Sbjct: 651 TFSNNWTGILWSNYAIYDPKTAYNTFAASTFTADKIDN 688


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 309 ILPVKFFNESVVSLLQIYCNLSVDDSKYS 223
           +LP+K F ES++  L +YC+  ++   +S
Sbjct: 583 LLPLKNFPESLIPYLPVYCDACLNLGTHS 611


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -1

Query: 630 YRATTSSSNPFTHFRFIMVPWLLHIMN---PRSSID 532
           Y     SSN   HF +I++ WL   +N   P +S+D
Sbjct: 118 YTLLNESSNNTWHFHYIVLLWLSQALNTPFPLNSLD 153


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 401 LNFQAPFLLPWSSRFSVFDKKIRRHTNIETQF 306
           L F A  L+P    F  F KKIR  + +  QF
Sbjct: 549 LGFIATALIPMPFAFFFFGKKIRAKSKMTAQF 580


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 321 HRNAILPVKFFNESVVSLLQIYCNLSVDDSKYSL 220
           H N       F ++++SLL+IY +L  DD + S+
Sbjct: 674 HENQWRIATIFCDALLSLLEIYRDLDEDDVQLSI 707


>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +2

Query: 476 NGYGSSRGASVRISNKDGMSMEERGFMICSSHGTMI 583
           +GYG S+ A      +    +++ GF++ S H  M+
Sbjct: 156 SGYGQSKAALNFTMKEISFELQDEGFIVISIHPGMV 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,990,233
Number of Sequences: 5004
Number of extensions: 62659
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)