Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30l05
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0388 + 17076157-17076254,17076762-17076813,17077672-170778...    34   0.13 
08_02_1487 - 27479463-27479988,27481625-27481887                       28   6.5  
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598...    28   8.6  

>11_04_0388 +
           17076157-17076254,17076762-17076813,17077672-17077867,
           17078242-17078321,17078465-17078581,17078895-17078950,
           17079238-17079268,17079292-17079342,17080411-17080477,
           17080621-17080724,17080802-17080909,17081874-17081987
          Length = 357

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 21/70 (30%), Positives = 28/70 (40%)
 Frame = +2

Query: 290 KNLTGRIAFRCLYDV*FFCQKLKNESSKVGEKVPENLRKTIINHWKGLIRKNTKFVFPQT 469
           +N  G   F C     +F +       K  E    +L++ I   WK L RK TK  F   
Sbjct: 190 ENCKGARTFFCSLGPGYFFEGKVGGEPKPKELAYPSLQEAISVPWKNLPRKTTKLYFAMR 249

Query: 470 TINGYGSSRG 499
            +  Y SS G
Sbjct: 250 VLENYESSEG 259


>08_02_1487 - 27479463-27479988,27481625-27481887
          Length = 262

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 350 KLKNESSKVGEKVPENLRKTIINHWKGLIRK 442
           KL N  SK+  K+P      I NHW   I+K
Sbjct: 84  KLGNRWSKIAAKLPGRTDNEIKNHWNTHIKK 114


>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
            30560292-30560346,30560537-30560613,30561228-30561315,
            30561490-30561593,30562050-30562231,30562347-30563109,
            30563195-30563438,30564513-30564658,30565158-30565283,
            30565404-30565517,30565595-30565762,30566283-30566528,
            30566605-30566767,30566970-30567064,30567274-30567357,
            30567769-30568055,30568359-30568572,30568923-30569140,
            30569386-30569623,30570312-30571118,30571202-30571301,
            30571694-30571737,30571824-30571973
          Length = 1942

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 347  QKLKNESSKVGEKVPENLRKTIINHWKGLIRKNTK 451
            ++L N  SK+  ++P      I NHW   I+K  K
Sbjct: 1770 EQLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLK 1804


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,269,056
Number of Sequences: 37544
Number of extensions: 333854
Number of successful extensions: 693
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)