Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30l05
         (723 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isofo...    33   1.0  
AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (auto...    33   1.0  
AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (auto...    33   1.0  
AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (auto...    33   1.0  
AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (auto...    33   1.0  
AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (auto...    33   1.0  

>AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isoform B
            protein.
          Length = 5202

 Score = 33.1 bits (72), Expect = 1.0
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +2

Query: 392  ENLRKTIINHWKGLIRKNTKFVFPQTTINGYGSSRGASVRISNKDGM 532
            +NL  TI+ +W+  I+ N   ++     NG    RG S+  S+K+G+
Sbjct: 3511 DNLEDTIVLNWRKPIQSNGPIIYYILLRNGIERFRGTSLSFSDKEGI 3557


>AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
            recessive, mild) protein.
          Length = 5202

 Score = 33.1 bits (72), Expect = 1.0
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +2

Query: 392  ENLRKTIINHWKGLIRKNTKFVFPQTTINGYGSSRGASVRISNKDGM 532
            +NL  TI+ +W+  I+ N   ++     NG    RG S+  S+K+G+
Sbjct: 3511 DNLEDTIVLNWRKPIQSNGPIIYYILLRNGIERFRGTSLSFSDKEGI 3557


>AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
            recessive, mild) protein.
          Length = 5202

 Score = 33.1 bits (72), Expect = 1.0
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +2

Query: 392  ENLRKTIINHWKGLIRKNTKFVFPQTTINGYGSSRGASVRISNKDGM 532
            +NL  TI+ +W+  I+ N   ++     NG    RG S+  S+K+G+
Sbjct: 3511 DNLEDTIVLNWRKPIQSNGPIIYYILLRNGIERFRGTSLSFSDKEGI 3557


>AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
            recessive, mild) protein.
          Length = 5202

 Score = 33.1 bits (72), Expect = 1.0
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +2

Query: 392  ENLRKTIINHWKGLIRKNTKFVFPQTTINGYGSSRGASVRISNKDGM 532
            +NL  TI+ +W+  I+ N   ++     NG    RG S+  S+K+G+
Sbjct: 3511 DNLEDTIVLNWRKPIQSNGPIIYYILLRNGIERFRGTSLSFSDKEGI 3557


>AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
            recessive, mild) protein.
          Length = 5202

 Score = 33.1 bits (72), Expect = 1.0
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +2

Query: 392  ENLRKTIINHWKGLIRKNTKFVFPQTTINGYGSSRGASVRISNKDGM 532
            +NL  TI+ +W+  I+ N   ++     NG    RG S+  S+K+G+
Sbjct: 3511 DNLEDTIVLNWRKPIQSNGPIIYYILLRNGIERFRGTSLSFSDKEGI 3557


>AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
            recessive, mild) protein.
          Length = 5202

 Score = 33.1 bits (72), Expect = 1.0
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +2

Query: 392  ENLRKTIINHWKGLIRKNTKFVFPQTTINGYGSSRGASVRISNKDGM 532
            +NL  TI+ +W+  I+ N   ++     NG    RG S+  S+K+G+
Sbjct: 3511 DNLEDTIVLNWRKPIQSNGPIIYYILLRNGIERFRGTSLSFSDKEGI 3557


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,591,181
Number of Sequences: 237096
Number of extensions: 1987296
Number of successful extensions: 6439
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6439
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)