Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30l05
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   1.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   2.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   5.1  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   6.7  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +2

Query: 470 TINGYGSSRGASVRISNKDGMSMEERGFMICSSHGT 577
           ++NGYGSS G   R         +E   ++C    +
Sbjct: 160 SLNGYGSSDGCDARKKKGPTPRQQEELCLVCGDRAS 195


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 490 RSISIYCGLRKYKFSIFSDESL 425
           R  S++CGL+KY  S F+ +S+
Sbjct: 232 RRASLFCGLQKYTRS-FAHQSI 252


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 490 RSISIYCGLRKYKFSIFSDESL 425
           R  S++CGL+KY  S F+ +S+
Sbjct: 227 RRASLFCGLQKYTRS-FAHQSI 247


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +2

Query: 410 IINHWKGLIRKNTKFVFPQTTINGYGSSRGASVRIS 517
           ++NH K L  +  K        N   SS+ A +RI+
Sbjct: 238 VVNHEKALREQAKKMNVDSLRSNANTSSQSAEIRIA 273


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -1

Query: 606 NPFTHFRFIMVPWLLHIMNPRSSIDIPSLFDIL 508
           NP   FR +M  W+  +    S+  +P  F  L
Sbjct: 342 NPAAFFRGMMQAWMTALGTASSAATLPITFRCL 374


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,154
Number of Sequences: 438
Number of extensions: 4415
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)