Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30l02
         (422 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0638 + 12493520-12494053                                         91   3e-19
08_01_0339 - 3003626-3004070,3004467-3004636,3004907-3005020,300...    28   2.7  
02_05_0197 - 26641356-26642188,26642312-26642398,26643373-266434...    27   6.2  

>02_02_0638 + 12493520-12494053
          Length = 177

 Score = 91.5 bits (217), Expect = 3e-19
 Identities = 43/84 (51%), Positives = 56/84 (66%), Gaps = 1/84 (1%)
 Frame = +1

Query: 130 LFAIPFTVLEIPNIKIKKPTWLQAPSAMTTFSLVLLSYFLVTGGIIYDVIVEPPSVGSTT 309
           L  +PF+ L  P  +++ P+ L  PS MT F+L+LL+YF V  G++YDVIVEPP +GS  
Sbjct: 32  LRVLPFSFLRPPRTRLRLPSNLALPSPMTVFALILLTYFAVVSGLVYDVIVEPPGIGSVQ 91

Query: 310 D-EHGXSRPVXFXPXRVNGXYIME 378
           D   G  RPV F P RVNG YI+E
Sbjct: 92  DPATGAVRPVVFLPGRVNGQYIIE 115


>08_01_0339 -
           3003626-3004070,3004467-3004636,3004907-3005020,
           3005592-3005704,3005848-3005926
          Length = 306

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 185 GFLIFMXGISKTVNGIANSPSISLLLVQ 102
           GFL    G+ + +  +AN PS+ L  VQ
Sbjct: 23  GFLCVKDGVDEMIKYVANEPSVGLYFVQ 50


>02_05_0197 -
           26641356-26642188,26642312-26642398,26643373-26643452,
           26643948-26644120,26644227-26644308,26644623-26644758,
           26644777-26644833,26644905-26645120,26645939-26646335,
           26646458-26646544,26647063-26647324,26648892-26648972,
           26649176-26650350
          Length = 1221

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -1

Query: 419 PSPPXEKRKLDARPSMMXXPLTRFGXKXTGLLXPCSSVVEPTLGGS 282
           P PP EK++  ARP+ +  P          LL   + + EP L G+
Sbjct: 37  PPPPVEKQQQQARPAAVAPPDQTLEFSDGLLLRVLACLPEPHLTGA 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,642,520
Number of Sequences: 37544
Number of extensions: 156507
Number of successful extensions: 265
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)