Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30k21
         (156 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811...    27   2.7  
07_01_0275 - 2023651-2023755,2025324-2025452,2025555-2025625,202...    26   3.6  

>04_04_0214 -
           23674270-23676858,23677574-23680843,23680941-23681119,
           23681200-23681559,23681645-23682086,23682199-23682332,
           23682479-23682680
          Length = 2391

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 47  RNVTLFRACNQCSWICKTLSCQD 115
           RNVTLF  C+  S +C+++  ++
Sbjct: 46  RNVTLFEKCHTVSGMCESIDIEE 68


>07_01_0275 -
           2023651-2023755,2025324-2025452,2025555-2025625,
           2025717-2025803,2026000-2026494,2026588-2026813
          Length = 370

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 53  VTLFRACNQCSWICKTLS 106
           V LF AC  CSW C+  S
Sbjct: 42  VLLFAACACCSWCCRRRS 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,047,739
Number of Sequences: 37544
Number of extensions: 51814
Number of successful extensions: 119
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 14,793,348
effective HSP length: 32
effective length of database: 13,591,940
effective search space used: 258246860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)