Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30k21
         (156 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   2.4  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    19   4.3  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    18   9.8  
AY078400-1|AAL83703.1|   31|Apis mellifera major royal jelly pro...    18   9.8  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = +2

Query: 56  TLFRACNQCSWICK 97
           T+F     C WIC+
Sbjct: 227 TIFVPVKPCPWICE 240


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +2

Query: 89  ICKTLSCQDV 118
           +C +++CQDV
Sbjct: 9   VCLSIACQDV 18


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = +2

Query: 89  ICKTLSCQDV 118
           +C  ++CQDV
Sbjct: 9   VCLGIACQDV 18


>AY078400-1|AAL83703.1|   31|Apis mellifera major royal jelly
           protein MRJP3 protein.
          Length = 31

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = +2

Query: 89  ICKTLSCQDV 118
           +C  ++CQDV
Sbjct: 9   VCLGIACQDV 18


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,344
Number of Sequences: 438
Number of extensions: 550
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 31
effective length of database: 132,765
effective search space used:  2655300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)