Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30k20
         (613 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70136-1|AAB09089.1| 1404|Homo sapiens megakaryocyte stimulating...    31   3.2  
X54673-1|CAA38484.1|  599|Homo sapiens GABA transporter protein.       29   9.8  
BX537158-1|CAH71962.1|  316|Homo sapiens olfactory receptor, fam...    29   9.8  
BC033904-1|AAH33904.1|  599|Homo sapiens solute carrier family 6...    29   9.8  

>U70136-1|AAB09089.1| 1404|Homo sapiens megakaryocyte stimulating
           factor protein.
          Length = 1404

 Score = 31.1 bits (67), Expect = 3.2
 Identities = 24/72 (33%), Positives = 36/72 (50%)
 Frame = +3

Query: 273 IRATTRKKPGFCNFKKHFHVLTRLSIIYEHSVHLLMDFSNPKDMNSAEETSWWEIHSKAE 452
           I++TT++ P   N KK   V+    I  EHSV    + S+    +S+  T  W+I S   
Sbjct: 129 IKSTTKRSPKPPNKKKTKKVIESEEITEEHSVSENQESSSSSSSSSSSSTI-WKIKS--- 184

Query: 453 WYFAKKSAKNRD 488
              +K SA NR+
Sbjct: 185 ---SKNSAANRE 193


>X54673-1|CAA38484.1|  599|Homo sapiens GABA transporter protein.
          Length = 599

 Score = 29.5 bits (63), Expect = 9.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 92  FLLFEYFYTSSKKYVELFFFKCSVIHFFYKI 184
           F LF+Y+  S    + L FF+C  I +FY +
Sbjct: 447 FKLFDYYSASGMSLLFLVFFECVSISWFYGV 477


>BX537158-1|CAH71962.1|  316|Homo sapiens olfactory receptor, family
           2, subfamily G, membervisiae) (SEC22L1) pseudogene
           protein.
          Length = 316

 Score = 29.5 bits (63), Expect = 9.8
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = -2

Query: 549 YIIGIFLRTHLAKCCCMPGRSHGFLHFFLRSTILLWNEFPTMMFPQ 412
           Y++ +   T L   CC+  R H  ++FFL +   +   F T + PQ
Sbjct: 35  YVLSLLGNTALILVCCLDSRLHTPMYFFLSNLSCVDICFTTSVAPQ 80


>BC033904-1|AAH33904.1|  599|Homo sapiens solute carrier family 6
           (neurotransmitter transporter, GABA), member 1 protein.
          Length = 599

 Score = 29.5 bits (63), Expect = 9.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 92  FLLFEYFYTSSKKYVELFFFKCSVIHFFYKI 184
           F LF+Y+  S    + L FF+C  I +FY +
Sbjct: 447 FKLFDYYSASGMSLLFLVFFECVSISWFYGV 477


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,023,577
Number of Sequences: 237096
Number of extensions: 1536941
Number of successful extensions: 2383
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2383
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6522878360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)