Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30k20
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.4  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   9.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   9.5  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   9.5  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   9.5  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    21   9.5  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   9.5  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   9.5  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   9.5  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    21   9.5  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    21   9.5  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   9.5  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   9.5  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +1

Query: 376 SWTSAIPRT*IVLRKHHGGKFIPKQNGTSQKKVQKTVTSSRHTTALG*MCSQKYS 540
           S T  IP T +  R H  G   PK++G ++    +++ ++      G + + K S
Sbjct: 434 SATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKAS 488


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 408 SAEETSWWEIHSKAEWYFAKKSAKNRD 488
           S E++  W   SKA      K  KN++
Sbjct: 192 SVEKSELWVYKSKASEEHGNKKKKNKE 218


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 320 LLKITESRLLPRCCPNKSMP 261
           ++K T+   +  CCPN + P
Sbjct: 221 VIKATKVLKMYACCPNDTYP 240


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +3

Query: 327 HVLTRLSIIYEHSVHLLMDFSNPKDMNSAEETSWWEIHSKAEWYFAKKSAKNRD 488
           +VLT+++ I EH   L+++     + +    TS   + S+   +    S  +R+
Sbjct: 170 NVLTKINKIEEHDTVLVVNIKKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRE 223


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +3

Query: 327 HVLTRLSIIYEHSVHLLMDFSNPKDMNSAEETSWWEIHSKAEWYFAKKSAKNRD 488
           +VLT+++ I EH   L+++     + +    TS   + S+   +    S  +R+
Sbjct: 170 NVLTKINKIEEHDTVLVVNIKKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRE 223


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +3

Query: 327 HVLTRLSIIYEHSVHLLMDFSNPKDMNSAEETSWWEIHSKAEWYFAKKSAKNRD 488
           +VLT+++ I EH   L+++     + +    TS   + S+   +    S  +R+
Sbjct: 181 NVLTKINKIEEHDTVLVVNIKKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRE 234


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +3

Query: 327 HVLTRLSIIYEHSVHLLMDFSNPKDMNSAEETSWWEIHSKAEWYFAKKSAKNRD 488
           +VLT+++ I EH   L+++     + +    TS   + S+   +    S  +R+
Sbjct: 181 NVLTKINKIEEHDTVLVVNIKKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRE 234


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +3

Query: 327 HVLTRLSIIYEHSVHLLMDFSNPKDMNSAEETSWWEIHSKAEWYFAKKSAKNRD 488
           +VLT+++ I EH   L+++     + +    TS   + S+   +    S  +R+
Sbjct: 181 NVLTKINKIEEHDTVLVVNIKKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRE 234


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +3

Query: 327 HVLTRLSIIYEHSVHLLMDFSNPKDMNSAEETSWWEIHSKAEWYFAKKSAKNRD 488
           +VLT+++ I EH   L+++     + +    TS   + S+   +    S  +R+
Sbjct: 181 NVLTKINKIEEHDTVLVVNIKKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRE 234


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +3

Query: 327 HVLTRLSIIYEHSVHLLMDFSNPKDMNSAEETSWWEIHSKAEWYFAKKSAKNRD 488
           +VLT+++ I EH   L+++     + +    TS   + S+   +    S  +R+
Sbjct: 181 NVLTKINKIKEHDTVLVVNIEKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRE 234


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +3

Query: 327 HVLTRLSIIYEHSVHLLMDFSNPKDMNSAEETSWWEIHSKAEWYFAKKSAKNRD 488
           +VLT+++ I EH   L+++     + +    TS   + S+   +    S  +R+
Sbjct: 181 NVLTKINKIKEHDTVLVVNIEKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRE 234


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 11/54 (20%), Positives = 27/54 (50%)
 Frame = +3

Query: 327 HVLTRLSIIYEHSVHLLMDFSNPKDMNSAEETSWWEIHSKAEWYFAKKSAKNRD 488
           +VLT+++ I EH   L+++    ++ +    TS   + ++   +    S  +R+
Sbjct: 170 NVLTKINKIKEHDTVLVVNIEKSENESKKYATSSNSLRNRTHGFQHTSSRYSRE 223


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +3

Query: 327 HVLTRLSIIYEHSVHLLMDFSNPKDMNSAEETSWWEIHSKAEWYFAKKSAKNRD 488
           +VLT+++ I EH   L+++     + +    TS   + S+   +    S  +R+
Sbjct: 181 NVLTKINKIEEHDTVLVVNIKKSGNESKKYATSSNSLRSRTHGFQHTSSRYSRE 234


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,436
Number of Sequences: 438
Number of extensions: 3330
Number of successful extensions: 19
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)