Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30k19
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    27   1.5  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    27   2.0  
SPBC16E9.05 |erg6||delta-sterol C-methyltransferase |Schizosacch...    26   2.7  
SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces...    26   3.5  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   6.2  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   6.2  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   8.2  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    25   8.2  

>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +2

Query: 335 VLLK*SLNIREKITMKIACFNCI 403
           V++K +LN  E++T++I C +CI
Sbjct: 570 VIVKPALNPAERMTVRICCHDCI 592


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 62  TKINLSFQQQINRLVSAFVKYRKTRIFSCSI 154
           T I++ FQ+ +  ++S   K R+T +FS ++
Sbjct: 165 TLIDMGFQRTLQSIISQLPKQRRTGLFSATM 195


>SPBC16E9.05 |erg6||delta-sterol C-methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 8   DIEPYLSLNNDVTKCQKITKINLSFQ-QQINRLVSAF 115
           D+  Y  L  D+TKCQ I  +   F+  ++ +LV+ +
Sbjct: 289 DLPWYYPLTGDITKCQNIWDVFTVFRTSRLGKLVTRY 325


>SPAC3F10.05c |mug113||DUF1766 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 310 SIWWTRGKSATSSHCWVAR 254
           SIWW+  + AT  + W++R
Sbjct: 67  SIWWSLSRKATRFYRWLSR 85


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 32  NNDVTKCQKITKINLSFQQQINRLVSAFVKYRKTRIFSCSI 154
           N D T+C  +  +N  F+     + S  V   + R F CSI
Sbjct: 690 NEDRTQCDHVFHVNAIFKPSRCYICSESVWGSELRCFHCSI 730


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 84   NNRLID*FPHSSNIGRQESFLARSFH 161
            +++L+D    SS    + SFLAR FH
Sbjct: 1586 SSKLVDILASSSVSSEERSFLARCFH 1611


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 299 PPY*FL*SKETRVLLK*SLNIREKITMKIACFNC 400
           PP   L   +T V +K  L++ +  T++I  FNC
Sbjct: 701 PPSGLLGPTDTAVFVKPDLSLEKLPTLEINTFNC 734


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 370 LFTNVEALLQKHSRLF 323
           +F NVE++ Q HSRLF
Sbjct: 515 VFGNVESIRQLHSRLF 530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,833,489
Number of Sequences: 5004
Number of extensions: 34028
Number of successful extensions: 84
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)