Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30k19
         (493 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0368 + 7840665-7841975                                           31   0.38 
01_01_0447 - 3327727-3328144,3328438-3328688,3328820-3328909,332...    28   3.5  
12_01_0585 - 4774877-4775008,4775150-4775308,4776030-4776131,477...    27   8.2  

>03_02_0368 + 7840665-7841975
          Length = 436

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 18/63 (28%), Positives = 33/63 (52%)
 Frame = +3

Query: 135 ESFLARSFHLNFSVKS*WQCTTEDMSEAPKAAVTACIHSNLATQQWEDVALFPLVHHIDS 314
           ESFL R+FH +F + +     T D +   +A + A  + ++A   WE+V L    H+ + 
Sbjct: 217 ESFLNRAFHADFELDTEGDVHTADPAGRCEANLAA--YHSIAALTWEEVLLHGTKHYSEG 274

Query: 315 CNQ 323
            ++
Sbjct: 275 LSR 277


>01_01_0447 -
           3327727-3328144,3328438-3328688,3328820-3328909,
           3329061-3329159,3329240-3329353,3329450-3329555,
           3329661-3329740,3329913-3330173,3330271-3330507,
           3330635-3330922
          Length = 647

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 68  INLSFQQQINRLVSAFVKYRKTRIFSCS 151
           ++L FQ+QI  ++S   K R+T +FS +
Sbjct: 186 LDLGFQKQITSIISKLPKLRRTGLFSAT 213


>12_01_0585 -
           4774877-4775008,4775150-4775308,4776030-4776131,
           4776480-4776485,4776655-4777008
          Length = 250

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 303 GGQEEKAPHPPIVGLQGWN 247
           GG  E   HP IVG QGW+
Sbjct: 165 GGDPECDLHPAIVGKQGWS 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,790,800
Number of Sequences: 37544
Number of extensions: 186257
Number of successful extensions: 486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)