Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30k17
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    32   0.071
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.5  
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit...    27   2.0  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    27   2.7  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    27   2.7  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    27   3.5  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    27   3.5  
SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c...    26   4.7  

>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 32.3 bits (70), Expect = 0.071
 Identities = 20/48 (41%), Positives = 26/48 (54%)
 Frame = -1

Query: 282 IIIFHNNCFVFLQCYPTLYYFRN*GTIKLYLRIARKL*IKFIFVIEKK 139
           III  N  F+FLQ Y +LY FR    +  Y+ I   L +  I+ I KK
Sbjct: 434 IIILLNGVFLFLQGYKSLYPFRLSLFVSYYMEIPIVLGLYLIWKIYKK 481


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 484 QRTFESNSTPPPLVALTHASHIATRPPGCNHKDNPVDEIGE 606
           + T E +  PPP  A   ++  A  PP  +H ++  D I E
Sbjct: 750 RETEEEDEGPPPQPARPESTRPALAPPSSSHSNDKYDVIQE 790


>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
           Cct3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 243 IEEKQNNYYEIL*ST*NNKTCSKVSLGQ*QEIITEVIRNL 362
           I++  + YY  L    N K C+ +  G  ++II EV RNL
Sbjct: 350 IDKLGDEYYTFLTGCKNPKACTILLRGPSKDIINEVERNL 389


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 21/59 (35%), Positives = 28/59 (47%)
 Frame = +1

Query: 379 QSFEILVMMFQMDGIVAHSHKFRVPMGERSGRRGLQRTFESNSTPPPLVALTHASHIAT 555
           Q FEI V      G   H      P GE + RR  + T ESN++   LV+   +SH +T
Sbjct: 95  QKFEIWVDGLTFLGCPVHIG----PNGEWAKRRKPRTTVESNASSSHLVSKPESSHPST 149


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 22/83 (26%), Positives = 36/83 (43%)
 Frame = -3

Query: 628  LFRLVLLFRQSRQQGYPCDCSREGGWRYVKHALELLMEVVYCLIQKFVVTRDGRCVRPLV 449
            +FR VL F++   + +          R  K     LME+V CL   F    D   ++ +V
Sbjct: 1064 IFRQVLPFQKEISESFLRSLESVLLQRLTKAGTATLMEIVPCLCSLFTRLNDYERLKKIV 1123

Query: 448  PETCENGRQFRPSETS*LIFQKI 380
                ++  + R SE +   FQK+
Sbjct: 1124 VSCLKSLEEARHSENN---FQKM 1143


>SPAC926.09c |fas1||fatty acid synthase beta subunit
           Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +1

Query: 484 QRTFESNSTPPPLVALTHASHIATRPPGCNHKDNPVDEIGEIKERDETNM 633
           Q+TF + + PP +VA + AS      P    +D P++ + +  E   T++
Sbjct: 307 QQTFPTTTLPPSVVADSLASSEGNPTPMLAVRDLPIETLNKHIETTNTHL 356


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +1

Query: 571 NHKDNPVDEIGEIKERDET---NMLHSTSSRHKIRKPSRRDLYVTISEL 708
           +H DN +DE G+ K R E     +L  +     I KP+    Y+T+ EL
Sbjct: 762 SHADNKIDERGKKKIRQENAFDKLLQISKKSKTINKPNVD--YLTLKEL 808


>SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 801

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 445 RVPMGERSGRRGLQRTFESNSTPPPLVALTHASHIA 552
           R+  G  +GR G +R F  +  P P        HIA
Sbjct: 650 RIKEGRYAGRLGFERNFAKDKKPKPKRLQLSPQHIA 685


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,791,482
Number of Sequences: 5004
Number of extensions: 56546
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)