Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30k17
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0024 + 25690428-25690637,25694488-25694549,25694667-256947...    30   2.1  
04_03_0329 - 14454840-14454862,14483886-14485630,14485843-14486648     29   2.8  
03_02_1029 - 13488535-13493037                                         29   2.8  
10_06_0008 - 9533424-9533475,9533526-9535344,9535599-9536364,955...    29   3.7  
08_02_0592 + 19064025-19066596,19067036-19067084,19068530-190686...    28   6.4  
03_05_0843 + 28126480-28127007,28127092-28127457,28129388-281294...    28   6.4  
10_01_0233 + 2471628-2471898,2474289-2475101,2475468-2475655           28   8.5  
04_01_0197 + 2323790-2324098,2324145-2324774                           28   8.5  

>01_06_0024 +
           25690428-25690637,25694488-25694549,25694667-25694715,
           25697066-25697182,25697305-25697358,25697813-25697898,
           25698058-25698163,25698354-25698488
          Length = 272

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -1

Query: 675 RGLSNFVPAGCRVEHVCFVSFFYFANLVNRVILVIAAG--RAGG 550
           R ++N VPA C+++H    S   +A    +V L++  G  R GG
Sbjct: 135 RNIANMVPAYCKIKHAGVGSAIEYAVCALKVELIVVIGHSRCGG 178


>04_03_0329 - 14454840-14454862,14483886-14485630,14485843-14486648
          Length = 857

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 481 LQRTFESNSTPPPLVALTHASHIATRPPGCNHKDNPVDEI 600
           LQ   + N+ PPP      A  +  RPP  +  +NPVD +
Sbjct: 339 LQNPPQQNAPPPPPQHSKLAEFLRIRPPTFSSSNNPVDAL 378


>03_02_1029 - 13488535-13493037
          Length = 1500

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 481 LQRTFESNSTPPPLVALTHASHIATRPPGCNHKDNPVDEI 600
           LQ   + N+ PPP      A  +  RPP  +  +NPVD +
Sbjct: 57  LQNPPQQNAPPPPPQHSKLAEFLRIRPPTFSSSNNPVDAL 96


>10_06_0008 -
           9533424-9533475,9533526-9535344,9535599-9536364,
           9551969-9552097
          Length = 921

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 481 LQRTFESNSTPPPLVALTHASHIATRPPGCNHKDNPVDEI 600
           LQ   + N+ PPP      A  +  RPP  +  +NPVD +
Sbjct: 374 LQNPPQHNAPPPPPQHSKLAEFLRIRPPTFSSSNNPVDAL 413


>08_02_0592 +
           19064025-19066596,19067036-19067084,19068530-19068605,
           19068767-19068922
          Length = 950

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +1

Query: 457 GERSGRRGLQRTFESNSTPPPLVALTHASHIATRPPGC 570
           GE   +RGL+     +  PPP       S I   PPGC
Sbjct: 112 GELGTKRGLEERAARSPPPPPPPKRRAVSAIRQFPPGC 149


>03_05_0843 +
           28126480-28127007,28127092-28127457,28129388-28129487,
           28130266-28130546,28130643-28130705,28131276-28131431,
           28131913-28132080,28132158-28132298,28132714-28132840,
           28132888-28132994,28134142-28134372,28134446-28134559,
           28135091-28135261
          Length = 850

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 369 VSLAIF*NISYDVSDGRNCRPFSQVSGTNGRTQRPSR 479
           +S+A F    Y  +DGR+C+PF+ + G       P +
Sbjct: 454 LSVAAFAVSGYASTDGRSCKPFNPLLGETYEADYPDK 490


>10_01_0233 + 2471628-2471898,2474289-2475101,2475468-2475655
          Length = 423

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = -1

Query: 480 PATAAAFAHWYPKLVRMGDNSVHLKHHN*YFKRLPTILRSNFXXXXXLFP 331
           P T+AA     P ++  GD+ V   ++N     LPTI+RSNF      FP
Sbjct: 30  PGTSAAKV---PAVLAFGDSIVDTGNNN----YLPTIVRSNFPPYGRDFP 72


>04_01_0197 + 2323790-2324098,2324145-2324774
          Length = 312

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +1

Query: 481 LQRTFESNSTPPPLVALTHASHIATRPPGCNHKDNPVD 594
           LQ   + N+ PPP      A     RPP  +  +NPVD
Sbjct: 65  LQNPPQHNAPPPPPQHSKLAEFFRIRPPTFSSSNNPVD 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,330,557
Number of Sequences: 37544
Number of extensions: 351609
Number of successful extensions: 977
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)