Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte30k15
(742 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc... 31 0.13
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 30 0.30
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 29 0.92
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 29 0.92
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 27 2.1
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 3.7
SPAC26H5.07c |||seven transmembrane receptor-like protein|Schizo... 26 4.9
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 26 4.9
SPCC191.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 6.5
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 26 6.5
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 26 6.5
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S... 25 8.6
>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 31.5 bits (68), Expect = 0.13
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +3
Query: 102 FNKENGYEIFITDFIYLWHVYFTERTFLTQLKESNDGIEFENDSQLLQDGIKLLVQPENL 281
F K + + +F+ + L YF + T LT+ KESN + F N+ + G+ + P
Sbjct: 40 FTKTHLHRLFVFVVLLLCSGYFLKHTLLTRPKESNVVMIFVNN---IGGGVLDVKSPRQW 96
Query: 282 KKVNVFEENEKR 317
+ + EN+K+
Sbjct: 97 ELEKISTENKKK 108
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 30.3 bits (65), Expect = 0.30
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -1
Query: 715 IWIVCNSLSLEHSVFIGCLGNIIVFCKILWGI 620
+W + S S ++ + C+G++I+FC +GI
Sbjct: 1119 VWFMFFSSSRWQAIRVECIGDLIIFCTAFYGI 1150
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 28.7 bits (61), Expect = 0.92
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 414 TQNLLKIINDLWTSQTILRNTLNKKDKELTAYKTKFGEI 530
T +L+ +IN WT Q ++ +TLN + +T G++
Sbjct: 256 TVDLIPMINHSWTYQALIHDTLNMQLNRITVESVDDGKM 294
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 28.7 bits (61), Expect = 0.92
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +3
Query: 192 LKESNDGIEFENDSQLLQDGIKLLVQPENLKKVNVFEENEKRNLSITL 335
LKE+ D ++F+ S++LQD ++L L K N FE+ +NLS L
Sbjct: 135 LKETLDNVDFDARSKILQD-LRLEYAEILLTKFN-FEKKGYQNLSSAL 180
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/54 (27%), Positives = 31/54 (57%)
Frame = +3
Query: 378 SRVSDEGMFQKITQNLLKIINDLWTSQTILRNTLNKKDKELTAYKTKFGEIQHK 539
++ +++G FQ+ + L++ ++LW+S LR TL L +++KF +K
Sbjct: 519 TQCAEDGEFQEYVE-LVEWSDNLWSSTDYLRATLGALTIYLLLFESKFNMYGNK 571
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 715 IWIVCNSLSLEHSVFIGCLGNII 647
IW V N SL + CLGN++
Sbjct: 1613 IWFVLNDFSLVLATICSCLGNLL 1635
>SPAC26H5.07c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 505
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +3
Query: 126 IFITDFIYLWHVYFTERTFLTQLKESNDGIEFENDSQLLQDGIKL 260
I + +YLW R F + + D EFE S L D + L
Sbjct: 415 ILMLTILYLWRPTENNRRFAMSEQVAQDVDEFEMTSSLSNDSLHL 459
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 26.2 bits (55), Expect = 4.9
Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 1/146 (0%)
Frame = +3
Query: 171 ERTFLTQLKE-SNDGIEFENDSQLLQDGIKLLVQPENLKKVNVFEENEKRNLSITLVMSC 347
E+T ++ KE D + D Q + L + N K +N+ E NEK +M
Sbjct: 960 EQTISSKYKELEKDYLNIMADYQHSSQHLSNLEKAINEKNLNIRELNEK-------LMRL 1012
Query: 348 GFPFKLKCRLSRVSDEGMFQKITQNLLKIINDLWTSQTILRNTLNKKDKELTAYKTKFGE 527
LK R S + Q++ + + + T ++ L + ++K + + K E
Sbjct: 1013 DDELLLKQR----SYDTKVQELREENASLKDQCRTYESQLASLVSKYSETESELNKKEAE 1068
Query: 528 IQHKHKKTEPFNDELHMNTHNMYETH 605
+ K+ + D+LH N +TH
Sbjct: 1069 LVIFQKEITEYRDQLHKAFQNPEKTH 1094
>SPCC191.10 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 149
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/35 (25%), Positives = 24/35 (68%)
Frame = +3
Query: 438 NDLWTSQTILRNTLNKKDKELTAYKTKFGEIQHKH 542
ND+WT++ ++R+ ++K+++ ++K G+ + H
Sbjct: 9 NDMWTARLLIRS--DQKEEKYPSFKKNAGKAINAH 41
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1389
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/70 (18%), Positives = 30/70 (42%)
Frame = +3
Query: 414 TQNLLKIINDLWTSQTILRNTLNKKDKELTAYKTKFGEIQHKHKKTEPFNDELHMNTHNM 593
T++ + D+W++ ++ L + + AY K ++H + T+ + +
Sbjct: 1049 TEDFVTTDGDIWSATYAIKRYLGENPTDTFAYYIKASLLEHLGETTDSVPSAIRLCELLE 1108
Query: 594 YETHFGESPI 623
E ESP+
Sbjct: 1109 QEYDVSESPV 1118
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 6.5
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +3
Query: 366 KCRLSRVSDEGMFQKITQNLLKIINDLWTSQTILRNT----LNKKDKELTAYKTKFGEIQ 533
K +L + G Q+ L ++++ +Q +R++ +NK + K K E+
Sbjct: 36 KEKLGAIRGGGSLQEKNAELRAELDNIRNAQAAIRSSKQTLINKVKAQDELLKKKVKELT 95
Query: 534 HKHKKTEPFNDELHMNTH 587
KKT PF E+ ++ H
Sbjct: 96 AM-KKTVPFKSEVELDKH 112
>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 609
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/51 (19%), Positives = 25/51 (49%)
Frame = +3
Query: 246 DGIKLLVQPENLKKVNVFEENEKRNLSITLVMSCGFPFKLKCRLSRVSDEG 398
D + L+ + ++N +EN++ + +C P+ +CR + + +G
Sbjct: 528 DDVGKLIMHKTADELNDLQENDENAFMNCMAEACYMPYIFQCRAKQDNFKG 578
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,165,599
Number of Sequences: 5004
Number of extensions: 68620
Number of successful extensions: 199
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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