Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30k15
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0564 - 4136114-4136566,4136977-4137047,4137197-4137275,413...    29   2.9  
01_03_0206 - 13783169-13783651,13783761-13783903,13783962-137841...    29   5.1  
01_06_1764 - 39730655-39730789,39730917-39731048,39731257-397313...    28   6.8  

>02_01_0564 -
           4136114-4136566,4136977-4137047,4137197-4137275,
           4137380-4137535,4137867-4137938,4138081-4138161,
           4138237-4138302,4138482-4138547,4138648-4138698,
           4138982-4139109,4139239-4139377,4139606-4139643,
           4139679-4139748,4140194-4140277
          Length = 517

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +3

Query: 438 NDLWTSQTILRNTLNKKDKELTAYKTKFGEIQHKHKKTEPFNDELHMNTHNMY-ETHFGE 614
           ND + + +      N +   L   + ++ + QH+ +  +P + + H + HNMY +TH+ +
Sbjct: 409 NDPFATSSSFLPPSNVQFAMLNQQQHQYYQSQHQQQYYQPHHFQDHQHHHNMYFQTHYQQ 468

Query: 615 SPI 623
           + I
Sbjct: 469 NQI 471


>01_03_0206 -
           13783169-13783651,13783761-13783903,13783962-13784128,
           13784641-13785149,13786031-13786312,13786397-13786792,
           13787232-13787504
          Length = 750

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
 Frame = +3

Query: 153 WHVY--FTERTFLTQLKESNDGIEFENDSQLLQDGIKL--LVQPENLKKVNVFEENEKRN 320
           WH+Y  F+ R  + +++ S  G  F N   +         ++  ++L      +   K  
Sbjct: 365 WHLYCEFSTRGLIIEVRRSTSGC-FRNSKLIKNISFSWSDMLHEKSLMLTEELDVRMKAM 423

Query: 321 LSITLVMSCGFPFKLKCRLSRVSDEG 398
            SIT  +    P+ LKC   RV+D+G
Sbjct: 424 ASITPPVQA--PYLLKCVPDRVTDDG 447


>01_06_1764 -
           39730655-39730789,39730917-39731048,39731257-39731301,
           39731390-39731506,39731631-39731811,39732453-39732541,
           39733177-39733217,39733520-39733638,39733720-39733820,
           39734098-39734163,39734247-39734329,39734570-39734750,
           39734846-39734965
          Length = 469

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 692 LAGTFSFYRLFG*YYCLL*NTMGYWRFSEMGFI-HVVSVHVKFIIEWFS 549
           L G   FY L G +YCL  + +  W F    ++ ++  ++ K  I WF+
Sbjct: 76  LDGNPPFYLLLGSFYCL--DRIWMWEFGRSAYMQYLDKLYKKHDIAWFT 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,091,286
Number of Sequences: 37544
Number of extensions: 353740
Number of successful extensions: 850
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)