Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30k13
         (274 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    24   3.4  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    23   7.8  

>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +2

Query: 29  QVMLLIRCHIKFPDAIVQILLTIHSAFNLKTFLIYVMYLCFVFMSF 166
           +V  L++C +K  D  + ++ T+ S      +L+Y  Y  F+   F
Sbjct: 148 RVSTLLQCCLKHYDLCIPVICTLSSNPKSAKYLLY--YTSFIINEF 191


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 258 NNVYFKYTFPVILCIIHKKH*VSLSQFI 175
           N ++  YT  VIL ++H  H   ++ FI
Sbjct: 117 NAIWSFYTTIVILAVLHVTHVFPITTFI 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,057,561
Number of Sequences: 5004
Number of extensions: 17377
Number of successful extensions: 27
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)