Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte30k13
         (274 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0722 - 26678873-26680843                                         27   2.0  
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200...    27   2.0  
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375...    27   2.0  
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342...    27   2.7  
03_02_0764 + 10990220-10992410,10992809-10993616,10994734-109949...    25   8.3  

>11_06_0722 - 26678873-26680843
          Length = 656

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 86  LLTIHSAFNLKTFLIYVMYLCFVFMSFKSTMNC 184
           L  +H  F  K FLIY  +  FV +SF     C
Sbjct: 260 LAFVHDYFYTKYFLIYSSHHLFVTLSFAMVPTC 292


>11_04_0236 +
           15215386-15216197,15216854-15218888,15219131-15220017,
           15222420-15226194
          Length = 2502

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = +1

Query: 91  YNSFCF*P---KNIFNLRNVPMFCFYEL*EH 174
           YNSFC       ++ N+R +  FC+Y L  H
Sbjct: 385 YNSFCLGKGINDDVENIRRILSFCYYHLPSH 415


>02_05_0008 +
           24934917-24935229,24936387-24936608,24936876-24937591,
           24937646-24937728,24938448-24938514,24938833-24939228,
           24939276-24939318,24939380-24939474,24940287-24940314,
           24940636-24940754
          Length = 693

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 140 YLCFVFMSFKSTMNCDRLT*CF-LCMMHKITGNVY 241
           YLC VF+       CD    C+ LC++H + G  Y
Sbjct: 443 YLCLVFIVLVDYGKCD----CYVLCLVHMVQGQKY 473


>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
            26834330-26834732,26834840-26835118,26835285-26835716,
            26836362-26836838,26837171-26837212,26837285-26837545,
            26837637-26838938,26839146-26839575,26839643-26840046,
            26840360-26840716,26840842-26841102,26841494-26842141,
            26842231-26842452,26842547-26842768,26842860-26843009,
            26843739-26844111,26844467-26844689,26845167-26845425,
            26845585-26845920,26846013-26846999,26848395-26849624,
            26849706-26849768,26849858-26849910,26849998-26850079,
            26850520-26850588,26851070-26851129,26851205-26851267,
            26851993-26852101,26852742-26852827,26853120-26853847,
            26854613-26854676
          Length = 3716

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -2

Query: 270  FFEPNNVYFKYT--FPVILCIIHKKH*VSLSQFIVLLKLIKTKHR 142
            F +PN  Y  +   FP++   +HK+  V+L++ I+ L L K  H+
Sbjct: 2506 FADPNVAYHLWVLVFPIVWVTLHKEEQVALAKPIIAL-LSKDYHK 2549


>03_02_0764 +
           10990220-10992410,10992809-10993616,10994734-10994968,
           10995028-10995169,10997365-10997444,10997636-10997776
          Length = 1198

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 50  CHIKFPDAIVQILLTIHSA 106
           C +K PDA+ + ++ +H+A
Sbjct: 851 CRLKGPDALTKFMIVLHNA 869


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,988,649
Number of Sequences: 37544
Number of extensions: 85738
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 256259052
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)